Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07740

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,485,049	+	fha	NIAGMN_07730	0.63	+0.5
1,485,050	-	fha	NIAGMN_07730	0.63	-1.1
1,485,050	-	fha	NIAGMN_07730	0.63	+0.6
1,485,191	-	fha	NIAGMN_07730	0.74	-1.9
1,485,336	+	fha	NIAGMN_07730	0.86	-1.7
1,485,394	-				+0.6
1,485,402	+				-1.3
1,485,402	+				-0.9
1,485,402	+				+0.0
1,485,402	+				-1.4
1,485,403	-				-0.7
1,485,403	-				+0.7
1,485,405	+				-0.5
1,485,406	-				-0.9
1,485,463	-				+0.2
1,485,463	-				-1.8
1,485,475	-				-2.0
1,485,558	+				+0.1
1,485,561	+				-2.9
1,485,686	-	tssJ	NIAGMN_07735	0.33	+1.1
1,485,731	+	tssJ	NIAGMN_07735	0.41	-0.3
1,485,732	-	tssJ	NIAGMN_07735	0.41	-0.6
1,485,732	-	tssJ	NIAGMN_07735	0.41	-1.9
1,485,732	-	tssJ	NIAGMN_07735	0.41	+0.8
1,485,768	-	tssJ	NIAGMN_07735	0.48	+0.6
1,485,777	+	tssJ	NIAGMN_07735	0.50	-0.3
1,485,815	+	tssJ	NIAGMN_07735	0.57	+0.9
1,485,818	-	tssJ	NIAGMN_07735	0.58	+0.9
1,485,898	+	tssJ	NIAGMN_07735	0.73	-0.1
1,485,899	-	tssJ	NIAGMN_07735	0.73	-0.2
1,485,914	+	tssJ	NIAGMN_07735	0.76	-1.3
1,485,999	+				+0.1
1,485,999	+				+1.1
1,486,000	-				-0.8
1,486,000	-				+0.7
1,486,000	-				-0.9
1,486,037	+				+0.3
1,486,037	+				-0.3
1,486,038	-				-1.2
1,486,038	-				-0.5
1,486,042	-				-0.8
1,486,120	+				-1.0
1,486,166	+				+0.1
1,486,218	+	tssK	NIAGMN_07740	0.13	+0.7
1,486,219	-	tssK	NIAGMN_07740	0.13	-0.4
1,486,341	+	tssK	NIAGMN_07740	0.22	-0.2
1,486,341	+	tssK	NIAGMN_07740	0.22	+0.1
1,486,345	+	tssK	NIAGMN_07740	0.23	+0.5
1,486,345	+	tssK	NIAGMN_07740	0.23	-0.2
1,486,346	-	tssK	NIAGMN_07740	0.23	-2.4
1,486,424	-	tssK	NIAGMN_07740	0.29	+0.8
1,486,501	-	tssK	NIAGMN_07740	0.34	+1.7
1,486,528	+	tssK	NIAGMN_07740	0.36	-0.1
1,486,531	-	tssK	NIAGMN_07740	0.37	-0.4
1,486,531	-	tssK	NIAGMN_07740	0.37	-1.7
1,486,533	+	tssK	NIAGMN_07740	0.37	-2.3
1,486,533	+	tssK	NIAGMN_07740	0.37	-2.1
1,486,534	-	tssK	NIAGMN_07740	0.37	-0.1
1,486,617	+	tssK	NIAGMN_07740	0.43	+0.1
1,486,618	-	tssK	NIAGMN_07740	0.43	-3.6
1,486,629	+	tssK	NIAGMN_07740	0.44	-0.6
1,486,630	-	tssK	NIAGMN_07740	0.44	-0.4
1,486,646	-	tssK	NIAGMN_07740	0.45	-2.2
1,486,659	-	tssK	NIAGMN_07740	0.46	-0.1
1,486,765	-	tssK	NIAGMN_07740	0.54	-0.1
1,486,786	-	tssK	NIAGMN_07740	0.56	-2.6
1,486,870	-	tssK	NIAGMN_07740	0.62	+2.0
1,486,870	-	tssK	NIAGMN_07740	0.62	-1.2
1,486,906	+	tssK	NIAGMN_07740	0.65	+0.1
1,486,906	+	tssK	NIAGMN_07740	0.65	+0.1
1,486,906	+	tssK	NIAGMN_07740	0.65	-3.8
1,486,907	-	tssK	NIAGMN_07740	0.65	+0.2
1,486,907	-	tssK	NIAGMN_07740	0.65	-1.0
1,486,907	-	tssK	NIAGMN_07740	0.65	-0.1
1,486,907	-	tssK	NIAGMN_07740	0.65	+0.6
1,486,907	-	tssK	NIAGMN_07740	0.65	+0.0
1,486,907	-	tssK	NIAGMN_07740	0.65	+0.2
1,486,935	+	tssK	NIAGMN_07740	0.67	+0.8
1,486,936	-	tssK	NIAGMN_07740	0.67	-0.3
1,487,057	+	tssK	NIAGMN_07740	0.76	+0.9
1,487,057	+	tssK	NIAGMN_07740	0.76	-1.2
1,487,057	+	tssK	NIAGMN_07740	0.76	+2.0
1,487,058	-	tssK	NIAGMN_07740	0.76	+0.5
1,487,094	+	tssK	NIAGMN_07740	0.79	+1.0
1,487,094	+	tssK	NIAGMN_07740	0.79	+1.1
1,487,094	+	tssK	NIAGMN_07740	0.79	+1.2
1,487,094	+	tssK	NIAGMN_07740	0.79	-2.7
1,487,094	+	tssK	NIAGMN_07740	0.79	+1.5
1,487,094	+	tssK	NIAGMN_07740	0.79	+1.5
1,487,094	+	tssK	NIAGMN_07740	0.79	-4.2
1,487,095	-	tssK	NIAGMN_07740	0.79	-3.2
1,487,095	-	tssK	NIAGMN_07740	0.79	+1.0
1,487,095	-	tssK	NIAGMN_07740	0.79	+0.6
1,487,095	-	tssK	NIAGMN_07740	0.79	-1.3
1,487,095	-	tssK	NIAGMN_07740	0.79	-0.4
1,487,095	-	tssK	NIAGMN_07740	0.79	+1.9
1,487,166	+	tssK	NIAGMN_07740	0.84	+1.7
1,487,167	-	tssK	NIAGMN_07740	0.84	+0.0
1,487,251	+				-0.1
1,487,252	-				-1.1
1,487,321	+				+0.4
1,487,322	-				-1.8
1,487,322	-				+0.2
1,487,371	+				+0.4
1,487,512	-	tssL	NIAGMN_07745	0.18	-2.1
1,487,512	-	tssL	NIAGMN_07745	0.18	-1.8
1,487,632	+	tssL	NIAGMN_07745	0.33	-2.2
1,487,633	-	tssL	NIAGMN_07745	0.33	+0.1
1,487,645	+	tssL	NIAGMN_07745	0.35	-1.2
1,487,662	+	tssL	NIAGMN_07745	0.37	-1.2
1,487,877	+	tssL	NIAGMN_07745	0.65	-0.3
1,487,877	+	tssL	NIAGMN_07745	0.65	-0.7
1,487,906	+	tssL	NIAGMN_07745	0.69	-0.6
1,487,907	-	tssL	NIAGMN_07745	0.69	+0.4
1,487,965	-	tssL	NIAGMN_07745	0.77	+0.4
1,487,965	-	tssL	NIAGMN_07745	0.77	+1.2
1,488,022	+	tssL	NIAGMN_07745	0.85	+0.0
1,488,074	+				+1.0
1,488,074	+				+0.8
1,488,075	-				-4.3
1,488,121	-				+0.3
1,488,121	-				-0.4
1,488,129	+				-0.0
1,488,129	+				-0.2
1,488,148	-				-1.0
1,488,231	+				-2.9
1,488,232	-				+0.0
1,488,313	-				-2.2
1,488,315	+				-0.4
1,488,315	+				-0.7
1,488,373	+				+0.6
1,488,373	+				+0.6