Strain Fitness in Escherichia coli ECRC102 around NIAGMN_07230

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfadH and NIAGMN_07230 are separated by 811 nucleotidesNIAGMN_07230 and tnpB are separated by 49 nucleotidestnpB and tnpB overlap by 4 nucleotides NIAGMN_07225: fadH - NADH:flavin oxidoreductase, at 1,392,329 to 1,393,471 fadH NIAGMN_07230: NIAGMN_07230 - IS66-like element ISEc8 family transposase, at 1,394,283 to 1,395,821 _07230 NIAGMN_07235: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,395,871 to 1,396,218 tnpB NIAGMN_07240: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 1,396,215 to 1,396,595 tnpB Position (kb) 1394 1395 1396Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1393.336 kb on - strand, within fadHat 1393.469 kb on + strandat 1393.478 kb on - strandat 1393.478 kb on - strandat 1393.597 kb on - strandat 1393.597 kb on - strandat 1393.597 kb on - strandat 1393.597 kb on - strandat 1393.601 kb on + strandat 1393.602 kb on - strandat 1393.604 kb on + strandat 1393.605 kb on - strandat 1393.605 kb on - strandat 1393.605 kb on - strandat 1393.605 kb on - strandat 1393.605 kb on - strandat 1393.605 kb on - strandat 1393.608 kb on + strandat 1393.608 kb on + strandat 1393.609 kb on - strandat 1393.633 kb on - strandat 1393.676 kb on - strandat 1393.797 kb on - strandat 1393.797 kb on - strandat 1393.895 kb on - strandat 1393.896 kb on + strandat 1393.897 kb on - strandat 1393.961 kb on + strandat 1394.011 kb on + strandat 1394.159 kb on + strandat 1394.232 kb on + strandat 1394.233 kb on - strandat 1394.233 kb on - strandat 1396.679 kb on + strandat 1396.679 kb on + strandat 1396.769 kb on + strandat 1396.769 kb on + strandat 1396.770 kb on - strandat 1396.770 kb on - strandat 1396.770 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
1,393,336 - fadH NIAGMN_07225 0.88 -2.2
1,393,469 + -3.1
1,393,478 - +0.3
1,393,478 - +0.8
1,393,597 - -1.4
1,393,597 - +0.5
1,393,597 - -0.5
1,393,597 - -1.3
1,393,601 + +1.4
1,393,602 - -0.5
1,393,604 + -0.3
1,393,605 - +0.3
1,393,605 - +0.0
1,393,605 - -1.4
1,393,605 - -1.4
1,393,605 - +1.6
1,393,605 - -0.8
1,393,608 + -1.7
1,393,608 + -0.4
1,393,609 - -1.1
1,393,633 - +0.4
1,393,676 - +0.7
1,393,797 - -3.1
1,393,797 - -2.6
1,393,895 - -2.1
1,393,896 + +1.2
1,393,897 - -3.5
1,393,961 + +1.2
1,394,011 + -3.3
1,394,159 + +2.3
1,394,232 + -2.6
1,394,233 - +0.5
1,394,233 - -0.5
1,396,679 + -1.7
1,396,679 + +1.2
1,396,769 + +1.2
1,396,769 + -3.1
1,396,770 - -0.7
1,396,770 - +0.5
1,396,770 - -1.0

Or see this region's nucleotide sequence