Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06280

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,194,454	+	tomB	NIAGMN_06270	0.44	+1.5
1,194,482	+	tomB	NIAGMN_06270	0.57	+0.6
1,194,487	+	tomB	NIAGMN_06270	0.59	-1.4
1,194,528	+	tomB	NIAGMN_06270	0.78	-1.5
1,194,528	+	tomB	NIAGMN_06270	0.78	-2.0
1,194,535	+	tomB	NIAGMN_06270	0.81	-1.0
1,194,535	+	tomB	NIAGMN_06270	0.81	+0.7
1,194,536	-	tomB	NIAGMN_06270	0.81	-0.9
1,194,581	+				-0.0
1,194,598	+				-0.8
1,194,652	+				-2.7
1,194,653	-				+1.7
1,194,711	-				-0.3
1,194,850	+	maa	NIAGMN_06275	0.18	-0.6
1,194,881	+	maa	NIAGMN_06275	0.24	+1.9
1,194,928	+	maa	NIAGMN_06275	0.33	-1.3
1,194,929	-	maa	NIAGMN_06275	0.33	-1.3
1,194,930	+	maa	NIAGMN_06275	0.33	+2.1
1,194,956	-	maa	NIAGMN_06275	0.38	-2.2
1,194,961	+	maa	NIAGMN_06275	0.39	-0.6
1,194,961	+	maa	NIAGMN_06275	0.39	-0.7
1,194,961	+	maa	NIAGMN_06275	0.39	+0.5
1,195,047	+	maa	NIAGMN_06275	0.54	-1.9
1,195,047	+	maa	NIAGMN_06275	0.54	+1.0
1,195,047	+	maa	NIAGMN_06275	0.54	-2.4
1,195,048	-	maa	NIAGMN_06275	0.54	-1.5
1,195,048	-	maa	NIAGMN_06275	0.54	+1.4
1,195,048	-	maa	NIAGMN_06275	0.54	-0.9
1,195,048	-	maa	NIAGMN_06275	0.54	-0.9
1,195,068	+	maa	NIAGMN_06275	0.58	-0.0
1,195,068	+	maa	NIAGMN_06275	0.58	+0.0
1,195,072	+	maa	NIAGMN_06275	0.59	+2.9
1,195,072	+	maa	NIAGMN_06275	0.59	-2.7
1,195,073	-	maa	NIAGMN_06275	0.59	+1.6
1,195,108	-	maa	NIAGMN_06275	0.65	+1.0
1,195,357	-				+0.7
1,195,372	+				-0.4
1,195,425	+				+0.9
1,195,425	+				+0.4
1,195,495	+	ylaC	NIAGMN_06280	0.17	-0.9
1,195,496	-	ylaC	NIAGMN_06280	0.17	-2.7
1,195,507	+	ylaC	NIAGMN_06280	0.20	+1.1
1,195,537	+	ylaC	NIAGMN_06280	0.26	-1.1
1,195,537	+	ylaC	NIAGMN_06280	0.26	+1.3
1,195,537	+	ylaC	NIAGMN_06280	0.26	+1.4
1,195,538	-	ylaC	NIAGMN_06280	0.26	+0.7
1,195,538	-	ylaC	NIAGMN_06280	0.26	-1.9
1,195,541	+	ylaC	NIAGMN_06280	0.27	+0.8
1,195,541	+	ylaC	NIAGMN_06280	0.27	+1.6
1,195,541	+	ylaC	NIAGMN_06280	0.27	+1.3
1,195,541	+	ylaC	NIAGMN_06280	0.27	+0.2
1,195,542	-	ylaC	NIAGMN_06280	0.27	-0.5
1,195,542	-	ylaC	NIAGMN_06280	0.27	-0.0
1,195,542	-	ylaC	NIAGMN_06280	0.27	+0.2
1,195,542	-	ylaC	NIAGMN_06280	0.27	+1.4
1,195,542	-	ylaC	NIAGMN_06280	0.27	+1.3
1,195,542	-	ylaC	NIAGMN_06280	0.27	+0.9
1,195,542	-	ylaC	NIAGMN_06280	0.27	+1.0
1,195,542	-	ylaC	NIAGMN_06280	0.27	+3.0
1,195,617	+	ylaC	NIAGMN_06280	0.43	-0.3
1,195,617	+	ylaC	NIAGMN_06280	0.43	+1.0
1,195,617	+	ylaC	NIAGMN_06280	0.43	+0.2
1,195,620	+	ylaC	NIAGMN_06280	0.44	-2.8
1,195,710	-	ylaC	NIAGMN_06280	0.63	-2.0
1,195,724	+	ylaC	NIAGMN_06280	0.66	+0.2
1,195,725	-	ylaC	NIAGMN_06280	0.66	-0.3
1,195,740	+	ylaC	NIAGMN_06280	0.69	+1.8
1,195,795	+	ylaC	NIAGMN_06280	0.81	+1.4
1,195,795	+	ylaC	NIAGMN_06280	0.81	+1.3
1,195,844	+				+1.1
1,195,855	+				+1.0
1,195,855	+				-1.8
1,195,883	+				+0.3
1,195,884	-				+0.6
1,195,884	-				+0.0
1,195,894	+				+0.5
1,195,894	+				+0.0
1,195,894	+				+2.5
1,195,894	+				-3.4
1,195,894	+				+0.1
1,195,895	-				-2.1
1,195,898	+				-1.2
1,195,974	-				+1.1
1,196,014	+				+2.0
1,196,014	+				+1.2
1,196,014	+				-1.2
1,196,015	-				+0.2
1,196,034	-				+0.1
1,196,036	+				+0.2
1,196,042	+				+0.4
1,196,042	+				-2.2
1,196,043	-				+0.9
1,196,043	-				+1.2
1,196,102	-				-0.0
1,196,119	+				+0.9
1,196,159	+				+3.1
1,196,178	+				+1.1
1,196,178	+				+1.0
1,196,178	+				+0.8
1,196,178	+				-2.0
1,196,270	+	pdeB	NIAGMN_06285	0.14	+0.3
1,196,314	-	pdeB	NIAGMN_06285	0.17	+0.8
1,196,476	-	pdeB	NIAGMN_06285	0.28	-1.6
1,196,503	-	pdeB	NIAGMN_06285	0.29	+1.4
1,196,503	-	pdeB	NIAGMN_06285	0.29	-0.5
1,196,576	+	pdeB	NIAGMN_06285	0.34	+0.3
1,196,603	-	pdeB	NIAGMN_06285	0.36	-1.0
1,196,644	+	pdeB	NIAGMN_06285	0.38	+0.3
1,196,675	+	pdeB	NIAGMN_06285	0.40	+1.6
1,196,688	+	pdeB	NIAGMN_06285	0.41	-2.0
1,196,717	+	pdeB	NIAGMN_06285	0.43	+0.0
1,196,726	+	pdeB	NIAGMN_06285	0.44	+1.4