Strain Fitness in Escherichia coli ECRC102 around NIAGMN_06125

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,162,704	+	glsA	NIAGMN_06120	0.25	-0.0
1,162,704	+	glsA	NIAGMN_06120	0.25	-1.9
1,162,704	+	glsA	NIAGMN_06120	0.25	-1.2
1,162,799	-	glsA	NIAGMN_06120	0.35	+1.6
1,162,827	+	glsA	NIAGMN_06120	0.38	+2.5
1,162,827	+	glsA	NIAGMN_06120	0.38	-0.0
1,162,827	+	glsA	NIAGMN_06120	0.38	+0.7
1,162,828	-	glsA	NIAGMN_06120	0.38	+0.7
1,162,828	-	glsA	NIAGMN_06120	0.38	+2.0
1,162,828	-	glsA	NIAGMN_06120	0.38	+2.4
1,162,857	+	glsA	NIAGMN_06120	0.42	-0.2
1,162,864	-	glsA	NIAGMN_06120	0.42	-0.5
1,162,876	-	glsA	NIAGMN_06120	0.44	-2.0
1,162,978	+	glsA	NIAGMN_06120	0.55	+1.6
1,162,979	-	glsA	NIAGMN_06120	0.55	+2.3
1,163,054	+	glsA	NIAGMN_06120	0.63	-1.2
1,163,108	-	glsA	NIAGMN_06120	0.68	-0.6
1,163,172	-	glsA	NIAGMN_06120	0.75	+0.2
1,163,189	-	glsA	NIAGMN_06120	0.77	+2.3
1,163,242	+	glsA	NIAGMN_06120	0.83	-1.0
1,163,243	-	glsA	NIAGMN_06120	0.83	+1.2
1,163,244	+	glsA	NIAGMN_06120	0.83	-3.2
1,163,316	+				+2.6
1,163,317	-				-2.7
1,163,317	-				-1.0
1,163,317	-				+1.1
1,163,358	+				+1.3
1,163,358	+				-0.6
1,163,359	-				-1.0
1,163,359	-				+1.3
1,163,382	-				-2.9
1,163,396	+				+2.3
1,163,396	+				-2.5
1,163,421	-				+0.1
1,163,422	+				-0.0
1,163,422	+				-1.0
1,163,422	+				+0.1
1,163,435	+				-0.9
1,163,436	-				-1.5
1,163,475	+				-0.2
1,163,481	-				+0.9
1,163,494	+				-1.4
1,163,495	-				-1.4
1,163,495	-				+2.3
1,163,495	-				-0.4
1,163,495	-				+0.0
1,163,499	-				-2.4
1,163,650	-				-1.2
1,163,662	+				-1.4
1,163,662	+				-1.0
1,163,663	-				-0.1
1,163,663	-				+1.9
1,163,663	-				-1.9
1,163,843	+				-0.0
1,163,856	+				+0.0
1,164,012	+	copA	NIAGMN_06125	0.14	-3.3
1,164,074	-	copA	NIAGMN_06125	0.16	-1.2
1,164,112	-	copA	NIAGMN_06125	0.18	-0.1
1,164,284	-	copA	NIAGMN_06125	0.25	+1.3
1,164,516	-	copA	NIAGMN_06125	0.34	+0.8
1,164,516	-	copA	NIAGMN_06125	0.34	-0.4
1,164,516	-	copA	NIAGMN_06125	0.34	-1.6
1,164,518	+	copA	NIAGMN_06125	0.34	-2.0
1,164,518	+	copA	NIAGMN_06125	0.34	+1.3
1,164,519	-	copA	NIAGMN_06125	0.34	+1.9
1,164,550	+	copA	NIAGMN_06125	0.35	-1.6
1,164,562	+	copA	NIAGMN_06125	0.36	-2.9
1,164,563	-	copA	NIAGMN_06125	0.36	-0.6
1,164,699	+	copA	NIAGMN_06125	0.41	-2.3
1,164,699	+	copA	NIAGMN_06125	0.41	-2.8
1,164,699	+	copA	NIAGMN_06125	0.41	+1.4
1,164,732	+	copA	NIAGMN_06125	0.43	+1.3
1,164,733	-	copA	NIAGMN_06125	0.43	-2.7
1,164,843	+	copA	NIAGMN_06125	0.47	-1.0
1,164,890	-	copA	NIAGMN_06125	0.49	+0.4
1,164,890	-	copA	NIAGMN_06125	0.49	-1.2
1,164,898	-	copA	NIAGMN_06125	0.49	+1.2
1,164,907	+	copA	NIAGMN_06125	0.50	-1.3
1,164,908	-	copA	NIAGMN_06125	0.50	+0.5
1,164,913	+	copA	NIAGMN_06125	0.50	-0.2
1,164,979	-	copA	NIAGMN_06125	0.53	-0.3
1,164,990	+	copA	NIAGMN_06125	0.53	+1.1
1,164,993	+	copA	NIAGMN_06125	0.53	+0.4
1,165,058	+	copA	NIAGMN_06125	0.56	+0.4
1,165,058	+	copA	NIAGMN_06125	0.56	+1.0
1,165,058	+	copA	NIAGMN_06125	0.56	-0.2
1,165,058	+	copA	NIAGMN_06125	0.56	-3.0
1,165,058	+	copA	NIAGMN_06125	0.56	-0.2
1,165,058	+	copA	NIAGMN_06125	0.56	+1.3
1,165,059	-	copA	NIAGMN_06125	0.56	-1.0
1,165,060	+	copA	NIAGMN_06125	0.56	-0.9
1,165,060	+	copA	NIAGMN_06125	0.56	+1.1
1,165,135	+	copA	NIAGMN_06125	0.59	+0.7
1,165,221	+	copA	NIAGMN_06125	0.62	+0.6
1,165,232	-	copA	NIAGMN_06125	0.63	-0.7
1,165,507	+	copA	NIAGMN_06125	0.74	-1.9
1,165,507	+	copA	NIAGMN_06125	0.74	+1.2
1,165,507	+	copA	NIAGMN_06125	0.74	-0.9
1,165,525	+	copA	NIAGMN_06125	0.74	-0.4
1,165,618	+	copA	NIAGMN_06125	0.78	-0.6
1,165,619	-	copA	NIAGMN_06125	0.78	-1.0
1,165,652	-	copA	NIAGMN_06125	0.79	-0.7
1,165,652	-	copA	NIAGMN_06125	0.79	+0.2
1,165,762	+	copA	NIAGMN_06125	0.84	+0.3
1,166,008	+				-2.7
1,166,008	+				-0.6
1,166,012	+				-3.8
1,166,013	-				-1.5
1,166,021	-				-1.4
1,166,021	-				+2.1
1,166,026	+				-1.3
1,166,074	+				+0.8
1,166,122	-				-0.7
1,166,128	+				-0.3
1,166,165	+				-3.8
1,166,166	-				+0.3
1,166,166	-				-1.0
1,166,169	+				+0.3
1,166,169	+				+0.3
1,166,169	+				+0.4
1,166,169	+				-2.8
1,166,169	+				+0.8
1,166,170	-				-1.0
1,166,170	-				-1.0
1,166,170	-				+1.1
1,166,194	-				+0.1
1,166,278	-				-1.4
1,166,287	-				-1.1
1,166,287	-				-1.2
1,166,295	+				+2.7
1,166,296	-				-0.9
1,166,296	-				+3.2
1,166,586	-	ybaQ	NIAGMN_06140	0.52	-0.7
1,166,609	+	ybaQ	NIAGMN_06140	0.57	+1.0
1,166,684	+	ybaQ	NIAGMN_06140	0.76	-2.7
1,166,685	-	ybaQ	NIAGMN_06140	0.77	+0.7
1,166,685	-	ybaQ	NIAGMN_06140	0.77	+1.7
1,166,768	-				-0.1
1,166,768	-				-2.2
1,166,832	+				+0.1
1,166,833	-				+0.5
1,166,833	-				+1.0
1,166,840	+				+1.1
1,166,840	+				-0.6
1,166,860	+				+1.9
1,166,860	+				-1.3
1,166,861	-				-0.7
1,166,861	-				+2.0
1,166,861	-				-2.4
1,166,881	-				-0.4
1,166,915	+				-0.3
1,166,915	+				+0.6
1,166,915	+				-3.4
1,166,916	-				+0.8
1,166,935	+				-0.4
1,166,935	+				-0.5
1,166,936	-				-1.4
1,166,936	-				+0.3
1,166,936	-				+0.0
1,166,936	-				+2.0
1,166,936	-				-0.1
1,166,984	-	ybaP	NIAGMN_06145	0.15	+0.6
1,167,083	-	ybaP	NIAGMN_06145	0.28	-0.5
1,167,095	-	ybaP	NIAGMN_06145	0.29	-0.3