Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dtpD and phrB are separated by 149 nucleotides phrB and ybgA overlap by 4 nucleotides ybgA and tnp-ISAs1 are separated by 148 nucleotides
NIAGMN_05070: dtpD - dipeptide permease DtpD, at 921,838 to 923,319
dtpD
NIAGMN_05080: phrB - deoxyribodipyrimidine photo-lyase, at 923,469 to 924,887
phrB
NIAGMN_05085: ybgA - DUF1722 domain-containing protein, at 924,884 to 925,393
ybgA
NIAGMN_05090: tnp-ISAs1 - ISAs1 family transposase, at 925,542 to 926,615
tnp-ISAs1
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 922.523 kb on + strand, within dtpD at 922.523 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD at 922.549 kb on + strand, within dtpD at 922.569 kb on + strand, within dtpD at 922.570 kb on - strand, within dtpD at 922.668 kb on + strand, within dtpD at 922.710 kb on + strand, within dtpD at 922.717 kb on + strand, within dtpD at 922.753 kb on + strand, within dtpD at 922.755 kb on + strand, within dtpD at 922.755 kb on + strand, within dtpD at 922.785 kb on + strand, within dtpD at 922.786 kb on - strand, within dtpD at 922.800 kb on + strand, within dtpD at 922.800 kb on + strand, within dtpD at 922.800 kb on + strand, within dtpD at 922.801 kb on - strand, within dtpD at 922.832 kb on + strand, within dtpD at 922.832 kb on + strand, within dtpD at 922.833 kb on - strand, within dtpD at 922.857 kb on + strand, within dtpD at 922.928 kb on + strand, within dtpD at 922.928 kb on + strand, within dtpD at 922.952 kb on - strand, within dtpD at 922.979 kb on + strand, within dtpD at 923.031 kb on + strand, within dtpD at 923.031 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.089 kb on + strand, within dtpD at 923.090 kb on - strand, within dtpD at 923.091 kb on + strand, within dtpD at 923.120 kb on - strand, within dtpD at 923.185 kb on + strand at 923.200 kb on + strand at 923.200 kb on + strand at 923.200 kb on + strand at 923.200 kb on + strand at 923.202 kb on + strand at 923.202 kb on + strand at 923.202 kb on + strand at 923.202 kb on + strand at 923.203 kb on - strand at 923.210 kb on + strand at 923.211 kb on - strand at 923.246 kb on + strand at 923.247 kb on - strand at 923.317 kb on + strand at 923.317 kb on + strand at 923.495 kb on - strand at 923.495 kb on - strand at 923.512 kb on - strand at 923.512 kb on - strand at 923.694 kb on - strand, within phrB at 923.846 kb on + strand, within phrB at 923.846 kb on + strand, within phrB at 923.847 kb on - strand, within phrB at 923.864 kb on + strand, within phrB at 923.947 kb on - strand, within phrB at 923.947 kb on - strand, within phrB at 924.025 kb on + strand, within phrB at 924.026 kb on - strand, within phrB at 924.026 kb on - strand, within phrB at 924.026 kb on - strand, within phrB at 924.026 kb on - strand, within phrB at 924.221 kb on - strand, within phrB at 924.253 kb on - strand, within phrB at 924.359 kb on + strand, within phrB at 924.435 kb on - strand, within phrB at 924.446 kb on - strand, within phrB at 924.446 kb on - strand, within phrB at 924.572 kb on - strand, within phrB at 924.572 kb on - strand, within phrB at 924.577 kb on + strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.578 kb on - strand, within phrB at 924.581 kb on + strand, within phrB at 924.581 kb on + strand, within phrB at 924.583 kb on + strand, within phrB at 924.623 kb on + strand, within phrB at 924.623 kb on + strand, within phrB at 924.627 kb on + strand, within phrB at 924.702 kb on + strand, within phrB at 924.726 kb on - strand, within phrB at 924.726 kb on - strand, within phrB at 924.749 kb on + strand at 924.749 kb on + strand at 924.750 kb on - strand at 924.750 kb on - strand at 924.750 kb on - strand at 924.753 kb on - strand at 924.753 kb on - strand at 924.776 kb on + strand at 924.785 kb on - strand at 924.785 kb on - strand at 924.853 kb on - strand at 924.887 kb on + strand at 924.887 kb on + strand at 924.888 kb on - strand at 924.911 kb on - strand at 924.936 kb on + strand, within ybgA at 924.937 kb on - strand, within ybgA at 924.977 kb on - strand, within ybgA at 924.978 kb on + strand, within ybgA at 924.978 kb on + strand, within ybgA at 924.978 kb on + strand, within ybgA at 924.979 kb on - strand, within ybgA at 924.979 kb on - strand, within ybgA at 924.979 kb on - strand, within ybgA at 924.979 kb on - strand, within ybgA at 924.989 kb on - strand, within ybgA at 925.040 kb on - strand, within ybgA at 925.335 kb on - strand, within ybgA at 925.421 kb on - strand at 925.427 kb on - strand at 925.480 kb on + strand at 925.482 kb on + strand at 925.483 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 922,523 + dtpD NIAGMN_05070 0.46 +1.3 922,523 + dtpD NIAGMN_05070 0.46 -0.9 922,549 + dtpD NIAGMN_05070 0.48 -2.0 922,549 + dtpD NIAGMN_05070 0.48 -0.1 922,549 + dtpD NIAGMN_05070 0.48 +0.5 922,569 + dtpD NIAGMN_05070 0.49 -2.0 922,570 - dtpD NIAGMN_05070 0.49 +2.3 922,668 + dtpD NIAGMN_05070 0.56 +1.0 922,710 + dtpD NIAGMN_05070 0.59 +0.4 922,717 + dtpD NIAGMN_05070 0.59 -1.4 922,753 + dtpD NIAGMN_05070 0.62 -0.7 922,755 + dtpD NIAGMN_05070 0.62 +0.2 922,755 + dtpD NIAGMN_05070 0.62 -1.7 922,785 + dtpD NIAGMN_05070 0.64 +0.6 922,786 - dtpD NIAGMN_05070 0.64 -1.9 922,800 + dtpD NIAGMN_05070 0.65 +0.3 922,800 + dtpD NIAGMN_05070 0.65 -2.1 922,800 + dtpD NIAGMN_05070 0.65 -0.1 922,801 - dtpD NIAGMN_05070 0.65 +0.3 922,832 + dtpD NIAGMN_05070 0.67 -0.4 922,832 + dtpD NIAGMN_05070 0.67 +4.3 922,833 - dtpD NIAGMN_05070 0.67 -0.4 922,857 + dtpD NIAGMN_05070 0.69 +0.5 922,928 + dtpD NIAGMN_05070 0.74 -0.6 922,928 + dtpD NIAGMN_05070 0.74 +0.3 922,952 - dtpD NIAGMN_05070 0.75 +0.7 922,979 + dtpD NIAGMN_05070 0.77 -0.8 923,031 + dtpD NIAGMN_05070 0.80 -0.1 923,031 + dtpD NIAGMN_05070 0.80 -0.6 923,089 + dtpD NIAGMN_05070 0.84 +1.1 923,089 + dtpD NIAGMN_05070 0.84 -1.1 923,089 + dtpD NIAGMN_05070 0.84 -1.7 923,089 + dtpD NIAGMN_05070 0.84 -3.5 923,089 + dtpD NIAGMN_05070 0.84 +1.3 923,089 + dtpD NIAGMN_05070 0.84 +1.4 923,089 + dtpD NIAGMN_05070 0.84 -3.0 923,089 + dtpD NIAGMN_05070 0.84 +1.3 923,090 - dtpD NIAGMN_05070 0.84 +0.3 923,091 + dtpD NIAGMN_05070 0.85 -0.0 923,120 - dtpD NIAGMN_05070 0.87 +0.9 923,185 + -0.8 923,200 + -0.2 923,200 + -0.5 923,200 + -1.0 923,200 + +0.3 923,202 + -2.4 923,202 + -3.3 923,202 + +1.4 923,202 + -0.8 923,203 - -1.0 923,210 + +0.2 923,211 - +1.5 923,246 + -0.4 923,247 - -0.3 923,317 + +0.4 923,317 + +1.5 923,495 - -0.4 923,495 - +2.4 923,512 - +0.7 923,512 - -0.8 923,694 - phrB NIAGMN_05080 0.16 -2.4 923,846 + phrB NIAGMN_05080 0.27 +1.2 923,846 + phrB NIAGMN_05080 0.27 +2.6 923,847 - phrB NIAGMN_05080 0.27 +1.9 923,864 + phrB NIAGMN_05080 0.28 -0.0 923,947 - phrB NIAGMN_05080 0.34 +0.4 923,947 - phrB NIAGMN_05080 0.34 -0.4 924,025 + phrB NIAGMN_05080 0.39 +1.0 924,026 - phrB NIAGMN_05080 0.39 -0.3 924,026 - phrB NIAGMN_05080 0.39 -1.0 924,026 - phrB NIAGMN_05080 0.39 -0.7 924,026 - phrB NIAGMN_05080 0.39 -0.1 924,221 - phrB NIAGMN_05080 0.53 +0.5 924,253 - phrB NIAGMN_05080 0.55 -3.1 924,359 + phrB NIAGMN_05080 0.63 +0.0 924,435 - phrB NIAGMN_05080 0.68 -1.2 924,446 - phrB NIAGMN_05080 0.69 -0.5 924,446 - phrB NIAGMN_05080 0.69 +0.9 924,572 - phrB NIAGMN_05080 0.78 +1.3 924,572 - phrB NIAGMN_05080 0.78 +0.7 924,577 + phrB NIAGMN_05080 0.78 +0.3 924,578 - phrB NIAGMN_05080 0.78 -1.5 924,578 - phrB NIAGMN_05080 0.78 -2.9 924,578 - phrB NIAGMN_05080 0.78 +0.5 924,578 - phrB NIAGMN_05080 0.78 +0.2 924,578 - phrB NIAGMN_05080 0.78 -0.0 924,578 - phrB NIAGMN_05080 0.78 -2.0 924,578 - phrB NIAGMN_05080 0.78 -1.9 924,578 - phrB NIAGMN_05080 0.78 +2.0 924,578 - phrB NIAGMN_05080 0.78 +1.9 924,581 + phrB NIAGMN_05080 0.78 +1.0 924,581 + phrB NIAGMN_05080 0.78 +1.0 924,583 + phrB NIAGMN_05080 0.79 +1.2 924,623 + phrB NIAGMN_05080 0.81 +1.1 924,623 + phrB NIAGMN_05080 0.81 +1.4 924,627 + phrB NIAGMN_05080 0.82 -3.7 924,702 + phrB NIAGMN_05080 0.87 -0.1 924,726 - phrB NIAGMN_05080 0.89 -0.6 924,726 - phrB NIAGMN_05080 0.89 -0.2 924,749 + +1.5 924,749 + -0.9 924,750 - -0.0 924,750 - +1.0 924,750 - +0.4 924,753 - -0.1 924,753 - +0.6 924,776 + +1.2 924,785 - +0.5 924,785 - -0.5 924,853 - -0.3 924,887 + -0.3 924,887 + -2.5 924,888 - +0.3 924,911 - +0.9 924,936 + ybgA NIAGMN_05085 0.10 +1.6 924,937 - ybgA NIAGMN_05085 0.10 -2.8 924,977 - ybgA NIAGMN_05085 0.18 +1.0 924,978 + ybgA NIAGMN_05085 0.18 +2.9 924,978 + ybgA NIAGMN_05085 0.18 +1.3 924,978 + ybgA NIAGMN_05085 0.18 -1.4 924,979 - ybgA NIAGMN_05085 0.19 -0.2 924,979 - ybgA NIAGMN_05085 0.19 +0.5 924,979 - ybgA NIAGMN_05085 0.19 +1.3 924,979 - ybgA NIAGMN_05085 0.19 +1.4 924,989 - ybgA NIAGMN_05085 0.21 +1.8 925,040 - ybgA NIAGMN_05085 0.31 -1.9 925,335 - ybgA NIAGMN_05085 0.88 +1.4 925,421 - +1.2 925,427 - -0.3 925,480 + +1.3 925,482 + +1.0 925,483 - -2.5
Or see this region's nucleotide sequence