Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt modC and modC are separated by 2 nucleotides modC and modA overlap by 1 nucleotides modA and acrZ are separated by 166 nucleotides
NIAGMN_04735: modC - molybdenum ABC transporter ATP-binding protein ModC, at 859,555 to 860,613
modC
NIAGMN_04740: modC - molybdenum ABC transporter ATP-binding protein ModC, at 860,616 to 861,305
modC
NIAGMN_04745: modA - molybdate ABC transporter substrate-binding protein, at 861,305 to 862,078
modA
NIAGMN_04750: acrZ - multidrug efflux pump accessory protein AcrZ, at 862,245 to 862,394
acrZ
Position (kb) 860
861
862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 859.708 kb on - strand, within modC at 859.708 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.730 kb on - strand, within modC at 859.830 kb on + strand, within modC at 859.831 kb on - strand, within modC at 859.918 kb on - strand, within modC at 859.956 kb on + strand, within modC at 859.957 kb on - strand, within modC at 860.063 kb on + strand, within modC at 860.063 kb on + strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.064 kb on - strand, within modC at 860.106 kb on - strand, within modC at 860.429 kb on - strand, within modC at 860.530 kb on - strand at 860.566 kb on - strand at 860.697 kb on - strand, within modC at 860.697 kb on - strand, within modC at 860.749 kb on + strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.750 kb on - strand, within modC at 860.850 kb on - strand, within modC at 861.051 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.065 kb on - strand, within modC at 861.106 kb on - strand, within modC at 861.109 kb on - strand, within modC at 861.112 kb on - strand, within modC at 861.112 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.148 kb on - strand, within modC at 861.202 kb on - strand, within modC at 861.234 kb on - strand, within modC at 861.271 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.307 kb on - strand at 861.317 kb on - strand at 861.364 kb on - strand at 861.370 kb on - strand at 861.395 kb on - strand, within modA at 861.395 kb on - strand, within modA at 861.479 kb on - strand, within modA at 861.479 kb on - strand, within modA at 861.499 kb on - strand, within modA at 861.624 kb on + strand, within modA at 861.713 kb on - strand, within modA at 861.744 kb on - strand, within modA at 861.782 kb on - strand, within modA at 861.782 kb on - strand, within modA at 861.782 kb on - strand, within modA at 861.788 kb on - strand, within modA at 861.842 kb on - strand, within modA at 861.935 kb on - strand, within modA at 861.944 kb on - strand, within modA at 862.090 kb on + strand at 862.101 kb on + strand at 862.101 kb on + strand at 862.101 kb on + strand at 862.116 kb on - strand at 862.147 kb on + strand at 862.147 kb on + strand at 862.148 kb on - strand at 862.168 kb on - strand at 862.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 859,708 - modC NIAGMN_04735 0.14 +0.6 859,708 - modC NIAGMN_04735 0.14 +0.9 859,730 - modC NIAGMN_04735 0.17 -1.0 859,730 - modC NIAGMN_04735 0.17 -0.5 859,830 + modC NIAGMN_04735 0.26 +0.7 859,831 - modC NIAGMN_04735 0.26 +0.4 859,918 - modC NIAGMN_04735 0.34 -2.0 859,956 + modC NIAGMN_04735 0.38 -0.7 859,957 - modC NIAGMN_04735 0.38 -0.1 860,063 + modC NIAGMN_04735 0.48 +0.7 860,063 + modC NIAGMN_04735 0.48 +1.1 860,064 - modC NIAGMN_04735 0.48 -2.3 860,064 - modC NIAGMN_04735 0.48 +0.7 860,064 - modC NIAGMN_04735 0.48 +0.6 860,064 - modC NIAGMN_04735 0.48 -3.3 860,064 - modC NIAGMN_04735 0.48 -1.2 860,064 - modC NIAGMN_04735 0.48 -0.6 860,064 - modC NIAGMN_04735 0.48 +0.9 860,064 - modC NIAGMN_04735 0.48 +1.2 860,064 - modC NIAGMN_04735 0.48 +0.1 860,064 - modC NIAGMN_04735 0.48 +0.4 860,106 - modC NIAGMN_04735 0.52 +1.0 860,429 - modC NIAGMN_04735 0.83 +1.3 860,530 - +0.0 860,566 - +1.6 860,697 - modC NIAGMN_04740 0.12 +1.2 860,697 - modC NIAGMN_04740 0.12 -0.2 860,749 + modC NIAGMN_04740 0.19 -0.1 860,750 - modC NIAGMN_04740 0.19 -1.0 860,750 - modC NIAGMN_04740 0.19 -2.3 860,750 - modC NIAGMN_04740 0.19 -2.7 860,750 - modC NIAGMN_04740 0.19 -0.8 860,750 - modC NIAGMN_04740 0.19 -0.7 860,750 - modC NIAGMN_04740 0.19 -1.0 860,750 - modC NIAGMN_04740 0.19 -2.5 860,850 - modC NIAGMN_04740 0.34 -1.0 861,051 - modC NIAGMN_04740 0.63 +3.7 861,065 - modC NIAGMN_04740 0.65 +0.5 861,065 - modC NIAGMN_04740 0.65 +0.8 861,065 - modC NIAGMN_04740 0.65 -0.2 861,065 - modC NIAGMN_04740 0.65 +0.7 861,106 - modC NIAGMN_04740 0.71 +0.4 861,109 - modC NIAGMN_04740 0.71 -1.2 861,112 - modC NIAGMN_04740 0.72 +0.7 861,112 - modC NIAGMN_04740 0.72 -0.1 861,148 - modC NIAGMN_04740 0.77 -0.1 861,148 - modC NIAGMN_04740 0.77 +1.5 861,148 - modC NIAGMN_04740 0.77 +2.2 861,202 - modC NIAGMN_04740 0.85 +0.6 861,234 - modC NIAGMN_04740 0.90 +1.4 861,271 - +0.8 861,307 - -1.8 861,307 - +2.0 861,307 - -2.3 861,307 - +1.1 861,307 - -1.3 861,317 - -0.2 861,364 - -1.4 861,370 - -0.1 861,395 - modA NIAGMN_04745 0.12 -0.5 861,395 - modA NIAGMN_04745 0.12 -2.2 861,479 - modA NIAGMN_04745 0.22 +0.3 861,479 - modA NIAGMN_04745 0.22 -3.6 861,499 - modA NIAGMN_04745 0.25 +1.3 861,624 + modA NIAGMN_04745 0.41 -1.1 861,713 - modA NIAGMN_04745 0.53 +1.0 861,744 - modA NIAGMN_04745 0.57 +0.4 861,782 - modA NIAGMN_04745 0.62 -0.3 861,782 - modA NIAGMN_04745 0.62 +2.1 861,782 - modA NIAGMN_04745 0.62 +0.1 861,788 - modA NIAGMN_04745 0.62 -0.3 861,842 - modA NIAGMN_04745 0.69 -2.4 861,935 - modA NIAGMN_04745 0.81 +0.3 861,944 - modA NIAGMN_04745 0.83 +0.4 862,090 + +0.5 862,101 + -0.8 862,101 + -2.0 862,101 + +0.2 862,116 - +1.8 862,147 + -4.1 862,147 + -0.7 862,148 - -1.4 862,168 - +0.0 862,171 + -0.3
Or see this region's nucleotide sequence