Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03910

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntybjS and amiD overlap by 4 nucleotidesamiD and ybjQ overlap by 4 nucleotidesybjQ and NIAGMN_03915 are separated by 210 nucleotidesNIAGMN_03915 and NIAGMN_03920 are separated by 274 nucleotides NIAGMN_03900: ybjS - Uncharacterized protein YbjS, at 703,175 to 704,188 ybjS NIAGMN_03905: amiD - N-acetylmuramoyl-L-alanine amidase AmiD, at 704,185 to 705,015 amiD NIAGMN_03910: ybjQ - UPF0145 protein YbjQ, at 705,012 to 705,335 ybjQ NIAGMN_03915: NIAGMN_03915 - hypothetical protein, at 705,546 to 705,836 _03915 NIAGMN_03920: NIAGMN_03920 - hypothetical protein, at 706,111 to 707,352 _03920 Position (kb) 705 706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 704.103 kb on + strandat 704.103 kb on + strandat 704.254 kb on - strandat 704.255 kb on + strandat 704.255 kb on + strandat 704.256 kb on - strandat 704.256 kb on - strandat 704.258 kb on - strandat 704.258 kb on - strandat 704.320 kb on - strand, within amiDat 704.328 kb on + strand, within amiDat 704.378 kb on - strand, within amiDat 704.477 kb on - strand, within amiDat 704.477 kb on - strand, within amiDat 704.581 kb on - strand, within amiDat 704.802 kb on - strand, within amiDat 704.845 kb on - strand, within amiDat 704.845 kb on - strand, within amiDat 704.884 kb on - strand, within amiDat 704.884 kb on - strand, within amiDat 705.060 kb on - strand, within ybjQat 705.171 kb on - strand, within ybjQat 705.175 kb on - strand, within ybjQat 705.175 kb on - strand, within ybjQat 705.188 kb on - strand, within ybjQat 705.454 kb on - strandat 705.458 kb on - strandat 705.529 kb on - strandat 705.529 kb on - strandat 705.529 kb on - strandat 705.570 kb on - strandat 705.587 kb on + strand, within NIAGMN_03915

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
704,103 + -1.3
704,103 + -1.3
704,254 - +0.7
704,255 + -1.1
704,255 + -0.2
704,256 - -2.5
704,256 - +1.6
704,258 - +2.4
704,258 - -1.1
704,320 - amiD NIAGMN_03905 0.16 -0.5
704,328 + amiD NIAGMN_03905 0.17 -1.4
704,378 - amiD NIAGMN_03905 0.23 -3.8
704,477 - amiD NIAGMN_03905 0.35 +0.6
704,477 - amiD NIAGMN_03905 0.35 -0.4
704,581 - amiD NIAGMN_03905 0.48 +0.9
704,802 - amiD NIAGMN_03905 0.74 +0.2
704,845 - amiD NIAGMN_03905 0.79 -0.3
704,845 - amiD NIAGMN_03905 0.79 +0.8
704,884 - amiD NIAGMN_03905 0.84 +0.8
704,884 - amiD NIAGMN_03905 0.84 +1.0
705,060 - ybjQ NIAGMN_03910 0.15 -1.8
705,171 - ybjQ NIAGMN_03910 0.49 +1.6
705,175 - ybjQ NIAGMN_03910 0.50 +0.0
705,175 - ybjQ NIAGMN_03910 0.50 -1.5
705,188 - ybjQ NIAGMN_03910 0.54 +1.1
705,454 - -0.1
705,458 - +1.5
705,529 - +2.3
705,529 - +2.3
705,529 - -1.1
705,570 - +2.4
705,587 + NIAGMN_03915 0.14 -2.6

Or see this region's nucleotide sequence