Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpmE2-2 and NIAGMN_03685 are separated by 424 nucleotides NIAGMN_03685 and NIAGMN_03690 are separated by 61 nucleotides NIAGMN_03690 and ureG are separated by 255 nucleotides ureG and ureF are separated by 11 nucleotides
NIAGMN_03680: rpmE2-2 - type B 50S ribosomal protein L31, at 657,678 to 657,941
rpmE2-2
NIAGMN_03685: NIAGMN_03685 - complement resistance protein TraT, at 658,366 to 658,494
_03685
NIAGMN_03690: NIAGMN_03690 - Transposase, at 658,556 to 658,897
_03690
NIAGMN_03695: ureG - urease accessory protein UreG, at 659,153 to 659,770
ureG
NIAGMN_03700: ureF - Urease accessory protein UreF, at 659,782 to 660,456
ureF
Position (kb) 658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 657.612 kb on + strand at 657.649 kb on - strand at 657.737 kb on + strand, within rpmE2-2 at 657.737 kb on + strand, within rpmE2-2 at 657.738 kb on - strand, within rpmE2-2 at 657.773 kb on - strand, within rpmE2-2 at 657.811 kb on + strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.878 kb on - strand, within rpmE2-2 at 657.894 kb on - strand, within rpmE2-2 at 657.904 kb on - strand, within rpmE2-2 at 657.907 kb on - strand, within rpmE2-2 at 657.907 kb on - strand, within rpmE2-2 at 657.912 kb on - strand, within rpmE2-2 at 657.958 kb on + strand at 657.982 kb on - strand at 657.986 kb on - strand at 658.018 kb on - strand at 658.047 kb on - strand at 658.047 kb on - strand at 658.052 kb on - strand at 658.055 kb on + strand at 658.056 kb on - strand at 658.056 kb on - strand at 658.088 kb on + strand at 658.093 kb on - strand at 658.182 kb on - strand at 658.247 kb on - strand at 658.278 kb on + strand at 658.279 kb on - strand at 658.284 kb on - strand at 658.364 kb on - strand at 658.551 kb on + strand at 658.822 kb on - strand, within NIAGMN_03690 at 658.856 kb on + strand, within NIAGMN_03690 at 659.299 kb on - strand, within ureG at 659.318 kb on - strand, within ureG at 659.393 kb on + strand, within ureG at 659.393 kb on + strand, within ureG at 659.394 kb on - strand, within ureG at 659.400 kb on + strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.401 kb on - strand, within ureG at 659.402 kb on + strand, within ureG at 659.402 kb on + strand, within ureG at 659.403 kb on - strand, within ureG at 659.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 657,612 + -0.8 657,649 - -2.2 657,737 + rpmE2-2 NIAGMN_03680 0.22 +1.6 657,737 + rpmE2-2 NIAGMN_03680 0.22 -0.0 657,738 - rpmE2-2 NIAGMN_03680 0.23 -0.1 657,773 - rpmE2-2 NIAGMN_03680 0.36 +0.2 657,811 + rpmE2-2 NIAGMN_03680 0.50 -1.6 657,812 - rpmE2-2 NIAGMN_03680 0.51 -1.0 657,812 - rpmE2-2 NIAGMN_03680 0.51 -1.4 657,812 - rpmE2-2 NIAGMN_03680 0.51 +1.2 657,812 - rpmE2-2 NIAGMN_03680 0.51 -2.5 657,823 - rpmE2-2 NIAGMN_03680 0.55 -0.2 657,823 - rpmE2-2 NIAGMN_03680 0.55 +0.6 657,823 - rpmE2-2 NIAGMN_03680 0.55 -0.7 657,823 - rpmE2-2 NIAGMN_03680 0.55 -1.4 657,878 - rpmE2-2 NIAGMN_03680 0.76 -0.6 657,894 - rpmE2-2 NIAGMN_03680 0.82 -0.3 657,904 - rpmE2-2 NIAGMN_03680 0.86 -0.1 657,907 - rpmE2-2 NIAGMN_03680 0.87 -2.2 657,907 - rpmE2-2 NIAGMN_03680 0.87 -1.1 657,912 - rpmE2-2 NIAGMN_03680 0.89 -1.1 657,958 + +0.0 657,982 - +0.3 657,986 - +0.5 658,018 - -2.8 658,047 - +0.5 658,047 - -0.0 658,052 - -0.7 658,055 + +0.0 658,056 - +0.3 658,056 - +0.0 658,088 + +0.7 658,093 - +0.1 658,182 - +1.9 658,247 - -1.6 658,278 + +0.7 658,279 - +0.2 658,284 - +1.7 658,364 - -2.7 658,551 + -1.0 658,822 - NIAGMN_03690 0.78 -1.7 658,856 + NIAGMN_03690 0.88 -1.5 659,299 - ureG NIAGMN_03695 0.24 -0.9 659,318 - ureG NIAGMN_03695 0.27 -0.9 659,393 + ureG NIAGMN_03695 0.39 +0.8 659,393 + ureG NIAGMN_03695 0.39 +0.3 659,394 - ureG NIAGMN_03695 0.39 -0.8 659,400 + ureG NIAGMN_03695 0.40 -1.6 659,401 - ureG NIAGMN_03695 0.40 -0.1 659,401 - ureG NIAGMN_03695 0.40 -0.9 659,401 - ureG NIAGMN_03695 0.40 +1.3 659,401 - ureG NIAGMN_03695 0.40 -1.3 659,402 + ureG NIAGMN_03695 0.40 +1.5 659,402 + ureG NIAGMN_03695 0.40 -0.7 659,403 - ureG NIAGMN_03695 0.40 -1.3 659,832 + +0.3
Or see this region's nucleotide sequence