Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03670 and rpmE2-2 are separated by 301 nucleotides rpmE2-2 and NIAGMN_03685 are separated by 424 nucleotides NIAGMN_03685 and NIAGMN_03690 are separated by 61 nucleotides
NIAGMN_03670: NIAGMN_03670 - Hok/Gef family protein, at 657,236 to 657,376
_03670
NIAGMN_03680: rpmE2-2 - type B 50S ribosomal protein L31, at 657,678 to 657,941
rpmE2-2
NIAGMN_03685: NIAGMN_03685 - complement resistance protein TraT, at 658,366 to 658,494
_03685
NIAGMN_03690: NIAGMN_03690 - Transposase, at 658,556 to 658,897
_03690
Position (kb) 657
658 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 656.709 kb on - strand at 656.901 kb on - strand at 656.990 kb on + strand at 656.990 kb on + strand at 656.991 kb on - strand at 656.992 kb on + strand at 657.088 kb on - strand at 657.128 kb on + strand at 657.245 kb on - strand at 657.312 kb on - strand, within NIAGMN_03670 at 657.345 kb on - strand, within NIAGMN_03670 at 657.345 kb on - strand, within NIAGMN_03670 at 657.377 kb on - strand at 657.493 kb on - strand at 657.612 kb on + strand at 657.649 kb on - strand at 657.737 kb on + strand, within rpmE2-2 at 657.737 kb on + strand, within rpmE2-2 at 657.738 kb on - strand, within rpmE2-2 at 657.773 kb on - strand, within rpmE2-2 at 657.811 kb on + strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.812 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.823 kb on - strand, within rpmE2-2 at 657.878 kb on - strand, within rpmE2-2 at 657.894 kb on - strand, within rpmE2-2 at 657.904 kb on - strand, within rpmE2-2 at 657.907 kb on - strand, within rpmE2-2 at 657.907 kb on - strand, within rpmE2-2 at 657.912 kb on - strand, within rpmE2-2 at 657.958 kb on + strand at 657.982 kb on - strand at 657.986 kb on - strand at 658.018 kb on - strand at 658.047 kb on - strand at 658.047 kb on - strand at 658.052 kb on - strand at 658.055 kb on + strand at 658.056 kb on - strand at 658.056 kb on - strand at 658.088 kb on + strand at 658.093 kb on - strand at 658.182 kb on - strand at 658.247 kb on - strand at 658.278 kb on + strand at 658.279 kb on - strand at 658.284 kb on - strand at 658.364 kb on - strand at 658.551 kb on + strand at 658.822 kb on - strand, within NIAGMN_03690 at 658.856 kb on + strand, within NIAGMN_03690
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 656,709 - +0.0 656,901 - -1.0 656,990 + +1.9 656,990 + +0.6 656,991 - -0.4 656,992 + +0.2 657,088 - -2.8 657,128 + +0.9 657,245 - +0.2 657,312 - NIAGMN_03670 0.54 +0.4 657,345 - NIAGMN_03670 0.77 +0.1 657,345 - NIAGMN_03670 0.77 -0.0 657,377 - +0.0 657,493 - +0.4 657,612 + -0.8 657,649 - -2.2 657,737 + rpmE2-2 NIAGMN_03680 0.22 +1.6 657,737 + rpmE2-2 NIAGMN_03680 0.22 -0.0 657,738 - rpmE2-2 NIAGMN_03680 0.23 -0.1 657,773 - rpmE2-2 NIAGMN_03680 0.36 +0.2 657,811 + rpmE2-2 NIAGMN_03680 0.50 -1.6 657,812 - rpmE2-2 NIAGMN_03680 0.51 -1.0 657,812 - rpmE2-2 NIAGMN_03680 0.51 -1.4 657,812 - rpmE2-2 NIAGMN_03680 0.51 +1.2 657,812 - rpmE2-2 NIAGMN_03680 0.51 -2.5 657,823 - rpmE2-2 NIAGMN_03680 0.55 -0.2 657,823 - rpmE2-2 NIAGMN_03680 0.55 +0.6 657,823 - rpmE2-2 NIAGMN_03680 0.55 -0.7 657,823 - rpmE2-2 NIAGMN_03680 0.55 -1.4 657,878 - rpmE2-2 NIAGMN_03680 0.76 -0.6 657,894 - rpmE2-2 NIAGMN_03680 0.82 -0.3 657,904 - rpmE2-2 NIAGMN_03680 0.86 -0.1 657,907 - rpmE2-2 NIAGMN_03680 0.87 -2.2 657,907 - rpmE2-2 NIAGMN_03680 0.87 -1.1 657,912 - rpmE2-2 NIAGMN_03680 0.89 -1.1 657,958 + +0.0 657,982 - +0.3 657,986 - +0.5 658,018 - -2.8 658,047 - +0.5 658,047 - -0.0 658,052 - -0.7 658,055 + +0.0 658,056 - +0.3 658,056 - +0.0 658,088 + +0.7 658,093 - +0.1 658,182 - +1.9 658,247 - -1.6 658,278 + +0.7 658,279 - +0.2 658,284 - +1.7 658,364 - -2.7 658,551 + -1.0 658,822 - NIAGMN_03690 0.78 -1.7 658,856 + NIAGMN_03690 0.88 -1.5
Or see this region's nucleotide sequence