Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03600 and citE overlap by 1 nucleotides citE and NIAGMN_03610 are separated by 10 nucleotides NIAGMN_03610 and terW are separated by 17 nucleotides terW and NIAGMN_03620 are separated by 260 nucleotides
NIAGMN_03600: NIAGMN_03600 - Phosphoribosyl transferase (PRTase), at 645,339 to 646,418
_03600
NIAGMN_03605: citE - citrate lyase subunit beta, at 646,418 to 647,374
citE
NIAGMN_03610: NIAGMN_03610 - DUF4236 domain-containing protein, at 647,385 to 648,593
_03610
NIAGMN_03615: terW - tellurium resistance protein TerW, at 648,611 to 649,078
terW
NIAGMN_03620: NIAGMN_03620 - IS66 family insertion sequence hypothetical protein, at 649,339 to 649,668
_03620
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 646.460 kb on + strand at 646.460 kb on + strand at 646.460 kb on + strand at 646.461 kb on - strand at 646.695 kb on + strand, within citE at 646.707 kb on - strand, within citE at 646.897 kb on + strand, within citE at 646.927 kb on + strand, within citE at 646.928 kb on - strand, within citE at 646.989 kb on - strand, within citE at 647.049 kb on + strand, within citE at 647.049 kb on + strand, within citE at 647.049 kb on + strand, within citE at 647.050 kb on - strand, within citE at 647.059 kb on + strand, within citE at 647.148 kb on + strand, within citE at 647.219 kb on - strand, within citE at 647.349 kb on + strand at 647.353 kb on + strand at 647.354 kb on - strand at 647.417 kb on + strand at 647.511 kb on + strand, within NIAGMN_03610 at 647.511 kb on + strand, within NIAGMN_03610 at 647.511 kb on + strand, within NIAGMN_03610 at 647.512 kb on - strand, within NIAGMN_03610 at 647.512 kb on - strand, within NIAGMN_03610 at 647.734 kb on + strand, within NIAGMN_03610 at 647.735 kb on - strand, within NIAGMN_03610 at 647.735 kb on - strand, within NIAGMN_03610 at 647.806 kb on + strand, within NIAGMN_03610 at 647.806 kb on + strand, within NIAGMN_03610 at 647.807 kb on - strand, within NIAGMN_03610 at 647.807 kb on - strand, within NIAGMN_03610 at 647.807 kb on - strand, within NIAGMN_03610 at 647.852 kb on + strand, within NIAGMN_03610 at 648.102 kb on + strand, within NIAGMN_03610 at 648.103 kb on - strand, within NIAGMN_03610 at 648.356 kb on + strand, within NIAGMN_03610 at 648.435 kb on + strand, within NIAGMN_03610 at 648.435 kb on + strand, within NIAGMN_03610 at 648.435 kb on + strand, within NIAGMN_03610 at 648.435 kb on + strand, within NIAGMN_03610 at 648.435 kb on + strand, within NIAGMN_03610 at 648.436 kb on - strand, within NIAGMN_03610 at 648.436 kb on - strand, within NIAGMN_03610 at 648.437 kb on + strand, within NIAGMN_03610 at 648.437 kb on + strand, within NIAGMN_03610 at 648.437 kb on + strand, within NIAGMN_03610 at 648.493 kb on + strand at 648.555 kb on - strand at 648.572 kb on + strand at 648.583 kb on + strand at 648.694 kb on + strand, within terW at 648.747 kb on + strand, within terW at 648.797 kb on + strand, within terW at 648.809 kb on - strand, within terW at 648.960 kb on + strand, within terW at 649.066 kb on + strand at 649.082 kb on + strand at 649.296 kb on + strand at 649.297 kb on - strand at 649.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 646,460 + -1.3 646,460 + +0.9 646,460 + -1.7 646,461 - -1.8 646,695 + citE NIAGMN_03605 0.29 -1.2 646,707 - citE NIAGMN_03605 0.30 +0.3 646,897 + citE NIAGMN_03605 0.50 -1.9 646,927 + citE NIAGMN_03605 0.53 -1.1 646,928 - citE NIAGMN_03605 0.53 -1.7 646,989 - citE NIAGMN_03605 0.60 +1.6 647,049 + citE NIAGMN_03605 0.66 -0.5 647,049 + citE NIAGMN_03605 0.66 +1.4 647,049 + citE NIAGMN_03605 0.66 -1.2 647,050 - citE NIAGMN_03605 0.66 -0.9 647,059 + citE NIAGMN_03605 0.67 +2.4 647,148 + citE NIAGMN_03605 0.76 +3.2 647,219 - citE NIAGMN_03605 0.84 -0.6 647,349 + +0.8 647,353 + +1.2 647,354 - -1.3 647,417 + -0.3 647,511 + NIAGMN_03610 0.10 +1.4 647,511 + NIAGMN_03610 0.10 +0.6 647,511 + NIAGMN_03610 0.10 +1.2 647,512 - NIAGMN_03610 0.11 +1.1 647,512 - NIAGMN_03610 0.11 +0.4 647,734 + NIAGMN_03610 0.29 -1.7 647,735 - NIAGMN_03610 0.29 -2.2 647,735 - NIAGMN_03610 0.29 -0.9 647,806 + NIAGMN_03610 0.35 +1.3 647,806 + NIAGMN_03610 0.35 -1.3 647,807 - NIAGMN_03610 0.35 +0.2 647,807 - NIAGMN_03610 0.35 -0.1 647,807 - NIAGMN_03610 0.35 +0.8 647,852 + NIAGMN_03610 0.39 +2.1 648,102 + NIAGMN_03610 0.59 +0.1 648,103 - NIAGMN_03610 0.59 +0.1 648,356 + NIAGMN_03610 0.80 -2.0 648,435 + NIAGMN_03610 0.87 +1.2 648,435 + NIAGMN_03610 0.87 +1.1 648,435 + NIAGMN_03610 0.87 +1.8 648,435 + NIAGMN_03610 0.87 -1.5 648,435 + NIAGMN_03610 0.87 -1.1 648,436 - NIAGMN_03610 0.87 -1.7 648,436 - NIAGMN_03610 0.87 -0.9 648,437 + NIAGMN_03610 0.87 -0.4 648,437 + NIAGMN_03610 0.87 -0.9 648,437 + NIAGMN_03610 0.87 -1.9 648,493 + +0.5 648,555 - -0.9 648,572 + -1.4 648,583 + -0.3 648,694 + terW NIAGMN_03615 0.18 -0.9 648,747 + terW NIAGMN_03615 0.29 -0.6 648,797 + terW NIAGMN_03615 0.40 -1.1 648,809 - terW NIAGMN_03615 0.42 +2.0 648,960 + terW NIAGMN_03615 0.75 -1.1 649,066 + +0.1 649,082 + -0.6 649,296 + +2.0 649,297 - -0.1 649,334 - +0.9
Or see this region's nucleotide sequence