Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03460

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfhaC and tnp-IS3 are separated by 180 nucleotidestnp-IS3 and NIAGMN_03465 overlap by 1 nucleotides NIAGMN_03455: fhaC - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 620,156 to 621,202 fhaC NIAGMN_03460: tnp-IS3 - IS3 family transposase, at 621,383 to 621,709 tnp-IS3 NIAGMN_03465: NIAGMN_03465 - IS3 family transposase, at 621,709 to 622,596 _03465 Position (kb) 621 622Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 620.476 kb on + strand, within fhaCat 620.536 kb on - strand, within fhaCat 620.633 kb on - strand, within fhaCat 620.661 kb on - strand, within fhaCat 620.737 kb on + strand, within fhaCat 620.740 kb on - strand, within fhaCat 620.740 kb on - strand, within fhaCat 620.740 kb on - strand, within fhaCat 620.789 kb on - strand, within fhaCat 620.789 kb on - strand, within fhaCat 620.854 kb on - strand, within fhaCat 620.854 kb on - strand, within fhaCat 621.041 kb on - strand, within fhaCat 621.180 kb on - strandat 621.192 kb on - strandat 621.314 kb on + strandat 621.314 kb on + strandat 621.315 kb on - strandat 621.315 kb on - strandat 622.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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620,476 + fhaC NIAGMN_03455 0.31 +0.1
620,536 - fhaC NIAGMN_03455 0.36 +0.8
620,633 - fhaC NIAGMN_03455 0.46 -1.5
620,661 - fhaC NIAGMN_03455 0.48 -2.2
620,737 + fhaC NIAGMN_03455 0.55 +1.2
620,740 - fhaC NIAGMN_03455 0.56 +0.6
620,740 - fhaC NIAGMN_03455 0.56 +1.0
620,740 - fhaC NIAGMN_03455 0.56 +0.8
620,789 - fhaC NIAGMN_03455 0.60 +0.5
620,789 - fhaC NIAGMN_03455 0.60 -3.4
620,854 - fhaC NIAGMN_03455 0.67 -0.2
620,854 - fhaC NIAGMN_03455 0.67 -0.2
621,041 - fhaC NIAGMN_03455 0.85 +0.8
621,180 - -0.3
621,192 - +0.8
621,314 + -1.7
621,314 + -0.9
621,315 - -1.1
621,315 - -2.8
622,655 - +2.0

Or see this region's nucleotide sequence