Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccS and sxy overlap by 38 nucleotides sxy and sulA are separated by 218 nucleotides
NIAGMN_02940: yccS - Inner membrane protein YccS, at 501,429 to 503,591
yccS
NIAGMN_02945: sxy - CRP-S regulon transcriptional coactivator Sxy, at 503,554 to 504,183
sxy
NIAGMN_02950: sulA - cell division inhibitor SulA, at 504,402 to 504,911
sulA
Position (kb) 503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 502.729 kb on - strand, within yccS at 502.731 kb on - strand, within yccS at 502.778 kb on - strand, within yccS at 502.887 kb on + strand, within yccS at 502.888 kb on - strand, within yccS at 502.934 kb on + strand, within yccS at 502.966 kb on + strand, within yccS at 502.966 kb on + strand, within yccS at 503.023 kb on - strand, within yccS at 503.107 kb on + strand, within yccS at 503.210 kb on + strand, within yccS at 503.211 kb on - strand, within yccS at 503.293 kb on - strand, within yccS at 503.293 kb on - strand, within yccS at 503.293 kb on - strand, within yccS at 503.327 kb on - strand, within yccS at 503.330 kb on + strand, within yccS at 503.331 kb on - strand, within yccS at 503.429 kb on - strand at 503.433 kb on - strand at 503.555 kb on + strand at 503.677 kb on - strand, within sxy at 503.747 kb on - strand, within sxy at 503.747 kb on - strand, within sxy at 503.749 kb on - strand, within sxy at 503.749 kb on - strand, within sxy at 503.749 kb on - strand, within sxy at 503.749 kb on - strand, within sxy at 503.753 kb on - strand, within sxy at 503.762 kb on - strand, within sxy at 503.770 kb on - strand, within sxy at 503.812 kb on - strand, within sxy at 503.812 kb on - strand, within sxy at 503.812 kb on - strand, within sxy at 503.812 kb on - strand, within sxy at 503.973 kb on + strand, within sxy at 503.974 kb on - strand, within sxy at 503.976 kb on - strand, within sxy at 504.009 kb on - strand, within sxy at 504.009 kb on - strand, within sxy at 504.039 kb on - strand, within sxy at 504.039 kb on - strand, within sxy at 504.039 kb on - strand, within sxy at 504.039 kb on - strand, within sxy at 504.141 kb on - strand at 504.141 kb on - strand at 504.141 kb on - strand at 504.156 kb on - strand at 504.165 kb on + strand at 504.209 kb on - strand at 504.260 kb on - strand at 504.266 kb on - strand at 504.401 kb on + strand at 504.401 kb on + strand at 504.401 kb on + strand at 504.402 kb on - strand at 504.405 kb on + strand at 504.485 kb on + strand, within sulA at 504.547 kb on + strand, within sulA at 504.548 kb on - strand, within sulA at 504.721 kb on + strand, within sulA at 504.736 kb on - strand, within sulA at 504.736 kb on - strand, within sulA at 504.821 kb on + strand, within sulA at 504.830 kb on + strand, within sulA at 505.054 kb on + strand at 505.054 kb on + strand at 505.054 kb on + strand at 505.054 kb on + strand at 505.059 kb on + strand at 505.062 kb on - strand at 505.062 kb on - strand at 505.115 kb on + strand at 505.115 kb on + strand at 505.115 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.129 kb on + strand at 505.152 kb on + strand at 505.169 kb on + strand at 505.169 kb on + strand at 505.175 kb on + strand at 505.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 502,729 - yccS NIAGMN_02940 0.60 -2.8 502,731 - yccS NIAGMN_02940 0.60 +1.9 502,778 - yccS NIAGMN_02940 0.62 -1.5 502,887 + yccS NIAGMN_02940 0.67 +1.9 502,888 - yccS NIAGMN_02940 0.67 -0.5 502,934 + yccS NIAGMN_02940 0.70 -1.1 502,966 + yccS NIAGMN_02940 0.71 -0.4 502,966 + yccS NIAGMN_02940 0.71 +0.6 503,023 - yccS NIAGMN_02940 0.74 -0.7 503,107 + yccS NIAGMN_02940 0.78 +2.1 503,210 + yccS NIAGMN_02940 0.82 +1.6 503,211 - yccS NIAGMN_02940 0.82 +1.4 503,293 - yccS NIAGMN_02940 0.86 -2.1 503,293 - yccS NIAGMN_02940 0.86 +0.3 503,293 - yccS NIAGMN_02940 0.86 -2.4 503,327 - yccS NIAGMN_02940 0.88 +3.4 503,330 + yccS NIAGMN_02940 0.88 +2.2 503,331 - yccS NIAGMN_02940 0.88 -1.7 503,429 - -0.1 503,433 - +3.8 503,555 + +1.5 503,677 - sxy NIAGMN_02945 0.20 -2.6 503,747 - sxy NIAGMN_02945 0.31 +1.0 503,747 - sxy NIAGMN_02945 0.31 +0.8 503,749 - sxy NIAGMN_02945 0.31 -1.7 503,749 - sxy NIAGMN_02945 0.31 +1.9 503,749 - sxy NIAGMN_02945 0.31 -1.3 503,749 - sxy NIAGMN_02945 0.31 +0.8 503,753 - sxy NIAGMN_02945 0.32 -2.7 503,762 - sxy NIAGMN_02945 0.33 -1.5 503,770 - sxy NIAGMN_02945 0.34 -1.2 503,812 - sxy NIAGMN_02945 0.41 +2.2 503,812 - sxy NIAGMN_02945 0.41 -0.5 503,812 - sxy NIAGMN_02945 0.41 +0.6 503,812 - sxy NIAGMN_02945 0.41 +2.1 503,973 + sxy NIAGMN_02945 0.67 -0.3 503,974 - sxy NIAGMN_02945 0.67 +0.4 503,976 - sxy NIAGMN_02945 0.67 -1.4 504,009 - sxy NIAGMN_02945 0.72 +1.1 504,009 - sxy NIAGMN_02945 0.72 +0.5 504,039 - sxy NIAGMN_02945 0.77 +0.4 504,039 - sxy NIAGMN_02945 0.77 -0.2 504,039 - sxy NIAGMN_02945 0.77 -1.6 504,039 - sxy NIAGMN_02945 0.77 +1.0 504,141 - -3.5 504,141 - -0.7 504,141 - -4.0 504,156 - +1.5 504,165 + -2.1 504,209 - +0.2 504,260 - +0.8 504,266 - -0.2 504,401 + -2.2 504,401 + -1.5 504,401 + +1.4 504,402 - +0.7 504,405 + -1.9 504,485 + sulA NIAGMN_02950 0.16 +3.3 504,547 + sulA NIAGMN_02950 0.28 -0.6 504,548 - sulA NIAGMN_02950 0.29 +0.9 504,721 + sulA NIAGMN_02950 0.63 -1.1 504,736 - sulA NIAGMN_02950 0.65 +0.1 504,736 - sulA NIAGMN_02950 0.65 -0.1 504,821 + sulA NIAGMN_02950 0.82 -0.3 504,830 + sulA NIAGMN_02950 0.84 -1.7 505,054 + -1.1 505,054 + -2.2 505,054 + -0.7 505,054 + +0.9 505,059 + -3.0 505,062 - -2.4 505,062 - +0.6 505,115 + -0.4 505,115 + -1.1 505,115 + -1.3 505,129 + -4.3 505,129 + -1.6 505,129 + -1.0 505,129 + -1.5 505,129 + -0.6 505,152 + -1.0 505,169 + -0.6 505,169 + +0.1 505,175 + -0.6 505,176 - -2.5
Or see this region's nucleotide sequence