Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_02795 and dnaC are separated by 21 nucleotides dnaC and NIAGMN_02805 are separated by 6 nucleotides NIAGMN_02805 and NIAGMN_02810 are separated by 78 nucleotides NIAGMN_02810 and NIAGMN_02815 are separated by 206 nucleotides
NIAGMN_02795: NIAGMN_02795 - DUF1627 domain-containing protein, at 482,263 to 483,033
_02795
NIAGMN_02800: dnaC - DNA replication protein DnaC, at 483,055 to 483,801
dnaC
NIAGMN_02805: NIAGMN_02805 - DNA-binding protein, at 483,808 to 484,899
_02805
NIAGMN_02810: NIAGMN_02810 - hypothetical protein, at 484,978 to 485,433
_02810
NIAGMN_02815: NIAGMN_02815 - Rha family transcriptional regulator, at 485,640 to 486,065
_02815
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 482.818 kb on - strand, within NIAGMN_02795 at 483.073 kb on - strand at 483.073 kb on - strand at 483.073 kb on - strand at 483.106 kb on - strand at 483.239 kb on - strand, within dnaC at 483.248 kb on - strand, within dnaC at 483.248 kb on - strand, within dnaC at 483.287 kb on - strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.359 kb on + strand, within dnaC at 483.360 kb on - strand, within dnaC at 483.765 kb on + strand at 483.986 kb on + strand, within NIAGMN_02805 at 484.372 kb on - strand, within NIAGMN_02805 at 484.372 kb on - strand, within NIAGMN_02805 at 484.477 kb on - strand, within NIAGMN_02805 at 484.664 kb on + strand, within NIAGMN_02805 at 484.665 kb on - strand, within NIAGMN_02805 at 484.665 kb on - strand, within NIAGMN_02805 at 484.696 kb on - strand, within NIAGMN_02805 at 484.748 kb on - strand, within NIAGMN_02805 at 484.764 kb on - strand, within NIAGMN_02805 at 484.764 kb on - strand, within NIAGMN_02805 at 484.764 kb on - strand, within NIAGMN_02805 at 484.777 kb on - strand, within NIAGMN_02805 at 484.777 kb on - strand, within NIAGMN_02805 at 484.840 kb on - strand at 484.840 kb on - strand at 484.840 kb on - strand at 484.840 kb on - strand at 484.840 kb on - strand at 484.903 kb on + strand at 484.936 kb on + strand at 484.937 kb on - strand at 484.937 kb on - strand at 484.937 kb on - strand at 484.937 kb on - strand at 484.982 kb on - strand at 485.431 kb on + strand at 485.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 482,818 - NIAGMN_02795 0.72 -0.5 483,073 - +0.3 483,073 - +0.0 483,073 - -0.1 483,106 - +2.0 483,239 - dnaC NIAGMN_02800 0.25 -0.1 483,248 - dnaC NIAGMN_02800 0.26 +2.9 483,248 - dnaC NIAGMN_02800 0.26 +1.7 483,287 - dnaC NIAGMN_02800 0.31 +2.4 483,359 + dnaC NIAGMN_02800 0.41 +0.5 483,359 + dnaC NIAGMN_02800 0.41 +0.8 483,359 + dnaC NIAGMN_02800 0.41 -1.4 483,360 - dnaC NIAGMN_02800 0.41 +2.9 483,765 + -0.7 483,986 + NIAGMN_02805 0.16 +0.4 484,372 - NIAGMN_02805 0.52 -0.1 484,372 - NIAGMN_02805 0.52 -0.5 484,477 - NIAGMN_02805 0.61 +0.3 484,664 + NIAGMN_02805 0.78 +1.7 484,665 - NIAGMN_02805 0.78 +3.8 484,665 - NIAGMN_02805 0.78 -0.0 484,696 - NIAGMN_02805 0.81 +0.8 484,748 - NIAGMN_02805 0.86 -0.5 484,764 - NIAGMN_02805 0.88 -0.9 484,764 - NIAGMN_02805 0.88 -2.3 484,764 - NIAGMN_02805 0.88 +0.6 484,777 - NIAGMN_02805 0.89 +0.4 484,777 - NIAGMN_02805 0.89 -1.9 484,840 - +0.3 484,840 - +0.2 484,840 - -2.5 484,840 - -1.3 484,840 - +0.3 484,903 + +1.6 484,936 + +3.4 484,937 - -0.8 484,937 - +1.0 484,937 - -0.0 484,937 - +0.4 484,982 - +0.3 485,431 + +1.0 485,528 + +0.3
Or see this region's nucleotide sequence