Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedP and yedQ overlap by 4 nucleotides yedQ and yodC are separated by 170 nucleotides yodC and yedI are separated by 78 nucleotides
NIAGMN_02425: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 425,646 to 426,461
yedP
NIAGMN_02430: yedQ - cellulose biosynthesis regulator YedQ, at 426,458 to 428,152
yedQ
NIAGMN_02435: yodC - Uncharacterized protein YodC, at 428,323 to 428,505
yodC
NIAGMN_02440: yedI - Inner membrane protein YedI, at 428,584 to 429,501
yedI
Position (kb) 426
427
428
429 Strain fitness (log2 ratio) -2
-1
0
1
2 at 425.496 kb on + strand at 425.517 kb on - strand at 425.668 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.711 kb on + strand at 425.715 kb on + strand at 425.811 kb on + strand, within yedP at 425.956 kb on + strand, within yedP at 425.957 kb on - strand, within yedP at 426.040 kb on + strand, within yedP at 426.091 kb on + strand, within yedP at 426.931 kb on + strand, within yedQ at 426.931 kb on + strand, within yedQ at 426.991 kb on - strand, within yedQ at 427.171 kb on - strand, within yedQ at 427.301 kb on - strand, within yedQ at 427.407 kb on + strand, within yedQ at 427.411 kb on + strand, within yedQ at 427.412 kb on - strand, within yedQ at 427.626 kb on + strand, within yedQ at 427.641 kb on - strand, within yedQ at 427.933 kb on + strand, within yedQ at 427.996 kb on + strand at 428.063 kb on - strand at 428.231 kb on + strand at 428.245 kb on + strand at 428.311 kb on - strand at 428.317 kb on - strand at 428.409 kb on - strand, within yodC at 428.569 kb on + strand at 428.585 kb on + strand at 428.586 kb on - strand at 428.586 kb on - strand at 428.586 kb on - strand at 428.591 kb on - strand at 428.684 kb on - strand, within yedI at 428.749 kb on - strand, within yedI at 428.749 kb on - strand, within yedI at 428.848 kb on - strand, within yedI at 428.911 kb on - strand, within yedI at 428.986 kb on - strand, within yedI at 429.045 kb on + strand, within yedI at 429.070 kb on + strand, within yedI at 429.071 kb on - strand, within yedI at 429.151 kb on - strand, within yedI at 429.151 kb on - strand, within yedI at 429.151 kb on - strand, within yedI
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 425,496 + -1.1 425,517 - +1.2 425,668 + -0.6 425,711 + +2.0 425,711 + +0.7 425,711 + -0.5 425,711 + +0.3 425,711 + +0.1 425,711 + -0.7 425,711 + +2.2 425,715 + -1.9 425,811 + yedP NIAGMN_02425 0.20 -1.0 425,956 + yedP NIAGMN_02425 0.38 -0.3 425,957 - yedP NIAGMN_02425 0.38 +0.5 426,040 + yedP NIAGMN_02425 0.48 +0.7 426,091 + yedP NIAGMN_02425 0.55 +1.3 426,931 + yedQ NIAGMN_02430 0.28 -2.6 426,931 + yedQ NIAGMN_02430 0.28 -0.1 426,991 - yedQ NIAGMN_02430 0.31 -1.3 427,171 - yedQ NIAGMN_02430 0.42 -1.4 427,301 - yedQ NIAGMN_02430 0.50 +0.5 427,407 + yedQ NIAGMN_02430 0.56 -0.6 427,411 + yedQ NIAGMN_02430 0.56 -0.6 427,412 - yedQ NIAGMN_02430 0.56 -0.1 427,626 + yedQ NIAGMN_02430 0.69 -0.7 427,641 - yedQ NIAGMN_02430 0.70 +1.2 427,933 + yedQ NIAGMN_02430 0.87 +0.4 427,996 + -1.1 428,063 - +1.6 428,231 + -0.1 428,245 + -1.9 428,311 - -0.9 428,317 - +0.4 428,409 - yodC NIAGMN_02435 0.47 +0.9 428,569 + -0.1 428,585 + +2.2 428,586 - +0.8 428,586 - +0.8 428,586 - -1.7 428,591 - -0.2 428,684 - yedI NIAGMN_02440 0.11 -0.4 428,749 - yedI NIAGMN_02440 0.18 +1.4 428,749 - yedI NIAGMN_02440 0.18 +1.1 428,848 - yedI NIAGMN_02440 0.29 -0.4 428,911 - yedI NIAGMN_02440 0.36 -1.3 428,986 - yedI NIAGMN_02440 0.44 +0.8 429,045 + yedI NIAGMN_02440 0.50 -1.2 429,070 + yedI NIAGMN_02440 0.53 +0.2 429,071 - yedI NIAGMN_02440 0.53 -0.1 429,151 - yedI NIAGMN_02440 0.62 -0.3 429,151 - yedI NIAGMN_02440 0.62 +0.4 429,151 - yedI NIAGMN_02440 0.62 -0.6
Or see this region's nucleotide sequence