Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02200

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_02190 and gpD are separated by 157 nucleotidesgpD and insI1 overlap by 50 nucleotides NIAGMN_02190: NIAGMN_02190 - phage tail protein, at 385,949 to 387,133 _02190 NIAGMN_02195: gpD - phage tail protein, at 387,291 to 387,614 gpD NIAGMN_02200: insI1 - IS30 family transposase, at 387,565 to 388,596 insI1 Position (kb) 387 388 389Strain fitness (log2 ratio) -2 -1 0 1 2at 387.071 kb on - strandat 387.092 kb on - strandat 387.243 kb on - strandat 387.801 kb on + strand, within insI1at 387.942 kb on + strand, within insI1at 387.976 kb on - strand, within insI1at 388.824 kb on - strandat 388.913 kb on + strandat 388.914 kb on - strandat 389.119 kb on + strandat 389.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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387,071 - +0.6
387,092 - +1.9
387,243 - +1.7
387,801 + insI1 NIAGMN_02200 0.23 +0.6
387,942 + insI1 NIAGMN_02200 0.37 +0.8
387,976 - insI1 NIAGMN_02200 0.40 -0.6
388,824 - -0.9
388,913 + +0.3
388,914 - +1.1
389,119 + -2.4
389,543 + +0.3

Or see this region's nucleotide sequence