Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01360

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaG and yeaH are separated by 112 nucleotidesyeaH and cdgI are separated by 278 nucleotides NIAGMN_01355: yeaG - protein kinase YeaG, at 244,095 to 246,029 yeaG NIAGMN_01360: yeaH - UPF0229 protein YeaH, at 246,142 to 247,425 yeaH NIAGMN_01365: cdgI - putative diguanylate cyclase CdgI, at 247,704 to 249,047 cdgI Position (kb) 246 247 248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 245.616 kb on - strand, within yeaGat 245.951 kb on + strandat 245.951 kb on + strandat 245.951 kb on + strandat 245.967 kb on + strandat 245.967 kb on + strandat 246.018 kb on - strandat 246.112 kb on + strandat 246.113 kb on - strandat 246.141 kb on + strandat 246.991 kb on + strand, within yeaHat 247.012 kb on + strand, within yeaHat 247.026 kb on + strand, within yeaHat 247.262 kb on - strand, within yeaHat 247.324 kb on - strandat 248.241 kb on + strand, within cdgI

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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245,616 - yeaG NIAGMN_01355 0.79 +2.0
245,951 + +1.0
245,951 + +0.1
245,951 + +0.5
245,967 + -3.5
245,967 + +0.3
246,018 - -4.5
246,112 + +1.8
246,113 - -0.7
246,141 + +0.9
246,991 + yeaH NIAGMN_01360 0.66 +0.5
247,012 + yeaH NIAGMN_01360 0.68 -0.8
247,026 + yeaH NIAGMN_01360 0.69 +0.4
247,262 - yeaH NIAGMN_01360 0.87 -0.7
247,324 - +1.2
248,241 + cdgI NIAGMN_01365 0.40 -0.0

Or see this region's nucleotide sequence