Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01070

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjO and cedA are separated by 288 nucleotidescedA and katE are separated by 182 nucleotides NIAGMN_01065: ydjO - Uncharacterized protein YdjO, at 187,661 to 188,416 ydjO NIAGMN_01070: cedA - cell division activator CedA, at 188,705 to 188,968 cedA NIAGMN_01075: katE - catalase HPII, at 189,151 to 191,412 katE Position (kb) 188 189Strain fitness (log2 ratio) -2 -1 0 1at 187.739 kb on - strand, within ydjOat 188.176 kb on - strand, within ydjOat 188.696 kb on - strandat 188.696 kb on - strandat 188.699 kb on + strandat 188.905 kb on - strand, within cedAat 189.055 kb on - strandat 189.087 kb on + strandat 189.363 kb on - strandat 189.525 kb on + strand, within katEat 189.572 kb on - strand, within katEat 189.574 kb on - strand, within katEat 189.721 kb on - strand, within katE

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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187,739 - ydjO NIAGMN_01065 0.10 -0.2
188,176 - ydjO NIAGMN_01065 0.68 -0.6
188,696 - -0.5
188,696 - -1.3
188,699 + -0.4
188,905 - cedA NIAGMN_01070 0.76 +0.7
189,055 - +1.5
189,087 + -1.2
189,363 - -1.6
189,525 + katE NIAGMN_01075 0.17 +0.1
189,572 - katE NIAGMN_01075 0.19 +0.4
189,574 - katE NIAGMN_01075 0.19 -2.6
189,721 - katE NIAGMN_01075 0.25 +0.1

Or see this region's nucleotide sequence