Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01065

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttcyP and ydjO are separated by 50 nucleotidesydjO and cedA are separated by 288 nucleotidescedA and katE are separated by 182 nucleotides NIAGMN_01060: tcyP - cystine/sulfocysteine:cation symporter, at 186,219 to 187,610 tcyP NIAGMN_01065: ydjO - Uncharacterized protein YdjO, at 187,661 to 188,416 ydjO NIAGMN_01070: cedA - cell division activator CedA, at 188,705 to 188,968 cedA NIAGMN_01075: katE - catalase HPII, at 189,151 to 191,412 katE Position (kb) 187 188 189Strain fitness (log2 ratio) -2 -1 0 1 2 3at 186.674 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.678 kb on + strand, within tcyPat 186.679 kb on - strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.814 kb on + strand, within tcyPat 186.866 kb on - strand, within tcyPat 187.020 kb on + strand, within tcyPat 187.037 kb on + strand, within tcyPat 187.092 kb on + strand, within tcyPat 187.100 kb on + strand, within tcyPat 187.349 kb on + strand, within tcyPat 187.361 kb on + strand, within tcyPat 187.615 kb on + strandat 187.663 kb on - strandat 187.697 kb on - strandat 187.739 kb on - strand, within ydjOat 188.176 kb on - strand, within ydjOat 188.696 kb on - strandat 188.696 kb on - strandat 188.699 kb on + strandat 188.905 kb on - strand, within cedAat 189.055 kb on - strandat 189.087 kb on + strandat 189.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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186,674 + tcyP NIAGMN_01060 0.33 +0.8
186,678 + tcyP NIAGMN_01060 0.33 +1.8
186,678 + tcyP NIAGMN_01060 0.33 +1.4
186,678 + tcyP NIAGMN_01060 0.33 +0.8
186,678 + tcyP NIAGMN_01060 0.33 -1.1
186,678 + tcyP NIAGMN_01060 0.33 -0.3
186,679 - tcyP NIAGMN_01060 0.33 +2.8
186,814 + tcyP NIAGMN_01060 0.43 +0.2
186,814 + tcyP NIAGMN_01060 0.43 +0.3
186,814 + tcyP NIAGMN_01060 0.43 -0.9
186,866 - tcyP NIAGMN_01060 0.46 +1.1
187,020 + tcyP NIAGMN_01060 0.58 +1.3
187,037 + tcyP NIAGMN_01060 0.59 -2.0
187,092 + tcyP NIAGMN_01060 0.63 +1.1
187,100 + tcyP NIAGMN_01060 0.63 -0.1
187,349 + tcyP NIAGMN_01060 0.81 +2.8
187,361 + tcyP NIAGMN_01060 0.82 +2.4
187,615 + -0.5
187,663 - +1.2
187,697 - -0.6
187,739 - ydjO NIAGMN_01065 0.10 -0.2
188,176 - ydjO NIAGMN_01065 0.68 -0.6
188,696 - -0.5
188,696 - -1.3
188,699 + -0.4
188,905 - cedA NIAGMN_01070 0.76 +0.7
189,055 - +1.5
189,087 + -1.2
189,363 - -1.6

Or see this region's nucleotide sequence