Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01020

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_01015 and yniD are separated by 174 nucleotidesyniD and ydiY are separated by 52 nucleotides NIAGMN_01015: NIAGMN_01015 - ShET2 enterotoxin, N-terminal region, at 178,377 to 180,275 _01015 NIAGMN_01020: yniD - Uncharacterized protein YniD, at 180,450 to 180,557 yniD NIAGMN_01025: ydiY - Uncharacterized protein YdiY, at 180,610 to 181,368 ydiY Position (kb) 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 180.459 kb on - strandat 180.632 kb on - strandat 180.632 kb on - strandat 180.652 kb on - strandat 180.729 kb on + strand, within ydiYat 180.730 kb on - strand, within ydiYat 180.831 kb on - strand, within ydiYat 180.846 kb on - strand, within ydiYat 180.880 kb on - strand, within ydiYat 180.882 kb on - strand, within ydiYat 181.111 kb on - strand, within ydiYat 181.197 kb on + strand, within ydiYat 181.492 kb on + strandat 181.553 kb on + strandat 181.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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180,459 - +0.3
180,632 - +0.0
180,632 - +0.5
180,652 - +0.7
180,729 + ydiY NIAGMN_01025 0.16 -1.5
180,730 - ydiY NIAGMN_01025 0.16 +1.8
180,831 - ydiY NIAGMN_01025 0.29 -0.7
180,846 - ydiY NIAGMN_01025 0.31 +0.1
180,880 - ydiY NIAGMN_01025 0.36 +0.1
180,882 - ydiY NIAGMN_01025 0.36 -0.9
181,111 - ydiY NIAGMN_01025 0.66 -1.6
181,197 + ydiY NIAGMN_01025 0.77 -2.2
181,492 + -0.9
181,553 + +1.8
181,553 + -0.8

Or see this region's nucleotide sequence