Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00910

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiS and ydiT overlap by 4 nucleotidesydiT and fadK are separated by 56 nucleotides NIAGMN_00905: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 156,680 to 157,969 ydiS NIAGMN_00910: ydiT - Ferredoxin-like protein YdiT, at 157,966 to 158,259 ydiT NIAGMN_00915: fadK - medium-chain fatty-acid--CoA ligase, at 158,316 to 159,962 fadK Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2at 156.988 kb on + strand, within ydiSat 157.279 kb on + strand, within ydiSat 157.516 kb on + strand, within ydiSat 157.868 kb on - strandat 158.113 kb on + strand, within ydiTat 158.467 kb on - strandat 158.673 kb on - strand, within fadKat 158.767 kb on + strand, within fadKat 159.097 kb on + strand, within fadK

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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156,988 + ydiS NIAGMN_00905 0.24 -0.9
157,279 + ydiS NIAGMN_00905 0.46 -2.0
157,516 + ydiS NIAGMN_00905 0.65 +2.4
157,868 - +1.1
158,113 + ydiT NIAGMN_00910 0.50 -0.3
158,467 - -0.0
158,673 - fadK NIAGMN_00915 0.22 +0.1
158,767 + fadK NIAGMN_00915 0.27 -1.0
159,097 + fadK NIAGMN_00915 0.47 +0.7

Or see this region's nucleotide sequence