Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdtA and mdtB overlap by 1 nucleotides mdtB and mdtC are separated by 0 nucleotides
MCAODC_20740: mdtA - multidrug efflux RND transporter subunit MdtA, at 957,339 to 958,586
mdtA
MCAODC_20745: mdtB - multidrug efflux RND transporter permease subunit MdtB, at 958,586 to 961,708
mdtB
MCAODC_20750: mdtC - multidrug efflux RND transporter permease subunit MdtC, at 961,709 to 964,786
mdtC
Position (kb) 958
959
960
961
962 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 957.594 kb on - strand, within mdtA at 957.596 kb on + strand, within mdtA at 957.596 kb on + strand, within mdtA at 957.596 kb on + strand, within mdtA at 957.679 kb on + strand, within mdtA at 957.876 kb on - strand, within mdtA at 958.038 kb on - strand, within mdtA at 958.118 kb on - strand, within mdtA at 958.150 kb on + strand, within mdtA at 958.208 kb on + strand, within mdtA at 958.209 kb on - strand, within mdtA at 958.226 kb on + strand, within mdtA at 958.227 kb on - strand, within mdtA at 958.279 kb on + strand, within mdtA at 958.633 kb on + strand at 958.633 kb on + strand at 958.634 kb on - strand at 958.636 kb on + strand at 958.882 kb on + strand at 958.890 kb on + strand at 958.891 kb on - strand at 958.891 kb on - strand at 959.080 kb on + strand, within mdtB at 959.252 kb on - strand, within mdtB at 959.343 kb on + strand, within mdtB at 959.343 kb on + strand, within mdtB at 959.397 kb on + strand, within mdtB at 959.397 kb on + strand, within mdtB at 959.486 kb on - strand, within mdtB at 959.491 kb on + strand, within mdtB at 959.492 kb on - strand, within mdtB at 959.581 kb on + strand, within mdtB at 959.612 kb on - strand, within mdtB at 959.657 kb on - strand, within mdtB at 959.791 kb on + strand, within mdtB at 959.792 kb on - strand, within mdtB at 959.965 kb on + strand, within mdtB at 960.007 kb on + strand, within mdtB at 960.204 kb on + strand, within mdtB at 960.240 kb on + strand, within mdtB at 960.241 kb on - strand, within mdtB at 960.338 kb on - strand, within mdtB at 960.532 kb on + strand, within mdtB at 960.810 kb on - strand, within mdtB at 960.810 kb on - strand, within mdtB at 960.841 kb on + strand, within mdtB at 960.842 kb on - strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.845 kb on + strand, within mdtB at 960.847 kb on + strand, within mdtB at 961.057 kb on + strand, within mdtB at 961.057 kb on + strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.062 kb on - strand, within mdtB at 961.090 kb on + strand, within mdtB at 961.091 kb on - strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.217 kb on + strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.218 kb on - strand, within mdtB at 961.219 kb on + strand, within mdtB at 961.250 kb on - strand, within mdtB at 961.357 kb on + strand, within mdtB at 961.357 kb on + strand, within mdtB at 961.358 kb on - strand, within mdtB at 961.560 kb on + strand at 961.560 kb on + strand at 961.560 kb on + strand at 961.561 kb on - strand at 961.573 kb on - strand at 961.640 kb on + strand at 961.706 kb on + strand at 961.706 kb on + strand at 961.707 kb on - strand at 961.734 kb on - strand at 961.771 kb on + strand at 961.772 kb on - strand at 961.785 kb on + strand at 961.798 kb on + strand at 961.979 kb on - strand at 961.981 kb on + strand at 961.982 kb on - strand at 962.125 kb on + strand, within mdtC at 962.125 kb on + strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.126 kb on - strand, within mdtC at 962.153 kb on + strand, within mdtC at 962.154 kb on - strand, within mdtC at 962.172 kb on - strand, within mdtC at 962.320 kb on - strand, within mdtC at 962.451 kb on - strand, within mdtC at 962.554 kb on - strand, within mdtC at 962.584 kb on + strand, within mdtC at 962.585 kb on - strand, within mdtC at 962.599 kb on - strand, within mdtC at 962.619 kb on + strand, within mdtC
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 957,594 - mdtA MCAODC_20740 0.20 -1.1 957,596 + mdtA MCAODC_20740 0.21 -2.3 957,596 + mdtA MCAODC_20740 0.21 +0.6 957,596 + mdtA MCAODC_20740 0.21 +1.6 957,679 + mdtA MCAODC_20740 0.27 -1.4 957,876 - mdtA MCAODC_20740 0.43 -3.8 958,038 - mdtA MCAODC_20740 0.56 +0.2 958,118 - mdtA MCAODC_20740 0.62 -2.3 958,150 + mdtA MCAODC_20740 0.65 +0.4 958,208 + mdtA MCAODC_20740 0.70 +1.3 958,209 - mdtA MCAODC_20740 0.70 -0.6 958,226 + mdtA MCAODC_20740 0.71 +1.3 958,227 - mdtA MCAODC_20740 0.71 -1.2 958,279 + mdtA MCAODC_20740 0.75 -1.0 958,633 + +0.3 958,633 + -0.7 958,634 - -1.8 958,636 + -3.5 958,882 + +1.2 958,890 + +1.1 958,891 - +0.4 958,891 - -3.6 959,080 + mdtB MCAODC_20745 0.16 -2.1 959,252 - mdtB MCAODC_20745 0.21 -0.2 959,343 + mdtB MCAODC_20745 0.24 -3.1 959,343 + mdtB MCAODC_20745 0.24 -0.2 959,397 + mdtB MCAODC_20745 0.26 -0.5 959,397 + mdtB MCAODC_20745 0.26 -1.9 959,486 - mdtB MCAODC_20745 0.29 +1.1 959,491 + mdtB MCAODC_20745 0.29 +3.5 959,492 - mdtB MCAODC_20745 0.29 -3.2 959,581 + mdtB MCAODC_20745 0.32 -0.0 959,612 - mdtB MCAODC_20745 0.33 -0.7 959,657 - mdtB MCAODC_20745 0.34 -0.8 959,791 + mdtB MCAODC_20745 0.39 -2.2 959,792 - mdtB MCAODC_20745 0.39 +1.7 959,965 + mdtB MCAODC_20745 0.44 -0.2 960,007 + mdtB MCAODC_20745 0.46 -1.5 960,204 + mdtB MCAODC_20745 0.52 -3.2 960,240 + mdtB MCAODC_20745 0.53 +0.7 960,241 - mdtB MCAODC_20745 0.53 -0.4 960,338 - mdtB MCAODC_20745 0.56 -1.4 960,532 + mdtB MCAODC_20745 0.62 -0.6 960,810 - mdtB MCAODC_20745 0.71 -3.3 960,810 - mdtB MCAODC_20745 0.71 -3.1 960,841 + mdtB MCAODC_20745 0.72 +1.8 960,842 - mdtB MCAODC_20745 0.72 -0.5 960,845 + mdtB MCAODC_20745 0.72 -1.1 960,845 + mdtB MCAODC_20745 0.72 +0.9 960,845 + mdtB MCAODC_20745 0.72 +1.8 960,847 + mdtB MCAODC_20745 0.72 -0.5 961,057 + mdtB MCAODC_20745 0.79 +1.4 961,057 + mdtB MCAODC_20745 0.79 +1.1 961,062 - mdtB MCAODC_20745 0.79 +1.1 961,062 - mdtB MCAODC_20745 0.79 +0.3 961,062 - mdtB MCAODC_20745 0.79 -0.7 961,062 - mdtB MCAODC_20745 0.79 +0.6 961,090 + mdtB MCAODC_20745 0.80 -1.3 961,091 - mdtB MCAODC_20745 0.80 -4.0 961,217 + mdtB MCAODC_20745 0.84 -1.2 961,217 + mdtB MCAODC_20745 0.84 +0.7 961,217 + mdtB MCAODC_20745 0.84 -0.9 961,218 - mdtB MCAODC_20745 0.84 -0.5 961,218 - mdtB MCAODC_20745 0.84 -3.4 961,218 - mdtB MCAODC_20745 0.84 +1.1 961,218 - mdtB MCAODC_20745 0.84 -1.2 961,218 - mdtB MCAODC_20745 0.84 -0.4 961,218 - mdtB MCAODC_20745 0.84 -0.2 961,218 - mdtB MCAODC_20745 0.84 -4.1 961,219 + mdtB MCAODC_20745 0.84 -1.6 961,250 - mdtB MCAODC_20745 0.85 +1.7 961,357 + mdtB MCAODC_20745 0.89 +0.6 961,357 + mdtB MCAODC_20745 0.89 -0.5 961,358 - mdtB MCAODC_20745 0.89 +1.0 961,560 + -3.5 961,560 + +0.9 961,560 + -0.8 961,561 - +0.3 961,573 - +2.6 961,640 + -0.6 961,706 + +1.3 961,706 + -2.3 961,707 - -2.8 961,734 - +1.1 961,771 + +0.4 961,772 - -1.7 961,785 + -0.9 961,798 + +0.8 961,979 - +0.6 961,981 + -0.1 961,982 - +0.5 962,125 + mdtC MCAODC_20750 0.14 -0.2 962,125 + mdtC MCAODC_20750 0.14 -1.1 962,126 - mdtC MCAODC_20750 0.14 +0.8 962,126 - mdtC MCAODC_20750 0.14 +0.4 962,126 - mdtC MCAODC_20750 0.14 -0.9 962,153 + mdtC MCAODC_20750 0.14 -0.1 962,154 - mdtC MCAODC_20750 0.14 -1.3 962,172 - mdtC MCAODC_20750 0.15 +1.6 962,320 - mdtC MCAODC_20750 0.20 +0.3 962,451 - mdtC MCAODC_20750 0.24 -2.0 962,554 - mdtC MCAODC_20750 0.27 +1.1 962,584 + mdtC MCAODC_20750 0.28 -1.9 962,585 - mdtC MCAODC_20750 0.28 -2.8 962,599 - mdtC MCAODC_20750 0.29 -1.1 962,619 + mdtC MCAODC_20750 0.30 -0.8
Or see this region's nucleotide sequence