Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_20305 and MCAODC_20310 are separated by 135 nucleotides MCAODC_20310 and MCAODC_20315 are separated by 15 nucleotides MCAODC_20315 and MCAODC_20320 are separated by 220 nucleotides
MCAODC_20305: MCAODC_20305 - phospholipase, at 872,742 to 873,812
_20305
MCAODC_20310: MCAODC_20310 - hypothetical protein, at 873,948 to 874,631
_20310
MCAODC_20315: MCAODC_20315 - hypothetical protein, at 874,647 to 875,057
_20315
MCAODC_20320: MCAODC_20320 - DUF932 domain-containing protein, at 875,278 to 876,099
_20320
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 873.981 kb on - strand at 873.982 kb on + strand at 874.026 kb on + strand, within MCAODC_20310 at 874.042 kb on + strand, within MCAODC_20310 at 874.235 kb on + strand, within MCAODC_20310 at 874.288 kb on - strand, within MCAODC_20310 at 874.296 kb on + strand, within MCAODC_20310 at 874.296 kb on + strand, within MCAODC_20310 at 874.314 kb on + strand, within MCAODC_20310 at 874.339 kb on + strand, within MCAODC_20310 at 874.339 kb on + strand, within MCAODC_20310 at 874.383 kb on - strand, within MCAODC_20310 at 874.428 kb on - strand, within MCAODC_20310 at 874.495 kb on - strand, within MCAODC_20310 at 874.495 kb on - strand, within MCAODC_20310 at 874.540 kb on + strand, within MCAODC_20310 at 874.611 kb on + strand at 874.615 kb on + strand at 874.630 kb on - strand at 874.720 kb on + strand, within MCAODC_20315 at 874.754 kb on + strand, within MCAODC_20315 at 874.754 kb on + strand, within MCAODC_20315 at 874.818 kb on + strand, within MCAODC_20315 at 874.818 kb on + strand, within MCAODC_20315 at 874.818 kb on + strand, within MCAODC_20315 at 874.820 kb on + strand, within MCAODC_20315 at 874.833 kb on + strand, within MCAODC_20315 at 874.833 kb on + strand, within MCAODC_20315 at 874.834 kb on - strand, within MCAODC_20315 at 874.869 kb on + strand, within MCAODC_20315 at 874.952 kb on + strand, within MCAODC_20315 at 874.953 kb on - strand, within MCAODC_20315 at 874.996 kb on + strand, within MCAODC_20315 at 875.033 kb on - strand at 875.063 kb on - strand at 875.086 kb on + strand at 875.087 kb on - strand at 875.087 kb on - strand at 875.089 kb on + strand at 875.089 kb on + strand at 875.102 kb on - strand at 875.105 kb on + strand at 875.303 kb on - strand at 875.318 kb on + strand at 875.363 kb on + strand, within MCAODC_20320 at 875.364 kb on - strand, within MCAODC_20320 at 875.416 kb on + strand, within MCAODC_20320 at 875.416 kb on + strand, within MCAODC_20320 at 875.430 kb on + strand, within MCAODC_20320 at 875.555 kb on + strand, within MCAODC_20320 at 875.615 kb on - strand, within MCAODC_20320 at 875.615 kb on - strand, within MCAODC_20320
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 873,981 - +0.1 873,982 + +0.1 874,026 + MCAODC_20310 0.11 +0.8 874,042 + MCAODC_20310 0.14 +0.9 874,235 + MCAODC_20310 0.42 -2.1 874,288 - MCAODC_20310 0.50 -1.2 874,296 + MCAODC_20310 0.51 +1.1 874,296 + MCAODC_20310 0.51 +1.0 874,314 + MCAODC_20310 0.54 +0.4 874,339 + MCAODC_20310 0.57 -0.2 874,339 + MCAODC_20310 0.57 +0.2 874,383 - MCAODC_20310 0.64 +2.0 874,428 - MCAODC_20310 0.70 +1.3 874,495 - MCAODC_20310 0.80 -0.5 874,495 - MCAODC_20310 0.80 -0.9 874,540 + MCAODC_20310 0.87 -1.7 874,611 + -1.5 874,615 + -2.3 874,630 - -0.5 874,720 + MCAODC_20315 0.18 +1.2 874,754 + MCAODC_20315 0.26 +0.6 874,754 + MCAODC_20315 0.26 -1.3 874,818 + MCAODC_20315 0.42 +0.5 874,818 + MCAODC_20315 0.42 -3.2 874,818 + MCAODC_20315 0.42 -0.2 874,820 + MCAODC_20315 0.42 +3.0 874,833 + MCAODC_20315 0.45 +0.3 874,833 + MCAODC_20315 0.45 +2.5 874,834 - MCAODC_20315 0.45 -2.7 874,869 + MCAODC_20315 0.54 -1.7 874,952 + MCAODC_20315 0.74 -1.9 874,953 - MCAODC_20315 0.74 -3.0 874,996 + MCAODC_20315 0.85 -1.2 875,033 - -1.1 875,063 - -2.3 875,086 + +2.1 875,087 - +0.7 875,087 - -2.1 875,089 + +0.7 875,089 + -3.1 875,102 - -2.3 875,105 + -0.4 875,303 - +0.2 875,318 + -1.6 875,363 + MCAODC_20320 0.10 +0.2 875,364 - MCAODC_20320 0.10 +1.9 875,416 + MCAODC_20320 0.17 +0.7 875,416 + MCAODC_20320 0.17 +0.1 875,430 + MCAODC_20320 0.18 +1.2 875,555 + MCAODC_20320 0.34 -1.6 875,615 - MCAODC_20320 0.41 -0.9 875,615 - MCAODC_20320 0.41 +0.3
Or see this region's nucleotide sequence