Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedP and yedQ overlap by 4 nucleotides yedQ and yodC are separated by 170 nucleotides yodC and yedI are separated by 78 nucleotides
MCAODC_19765: yedP - mannosyl-3-phosphoglycerate phosphatase-related protein, at 779,266 to 780,081
yedP
MCAODC_19770: yedQ - cellulose biosynthesis regulator YedQ, at 780,078 to 781,772
yedQ
MCAODC_19775: yodC - Uncharacterized protein YodC, at 781,943 to 782,125
yodC
MCAODC_19780: yedI - Inner membrane protein YedI, at 782,204 to 783,121
yedI
Position (kb) 780
781
782 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 779.107 kb on + strand at 779.117 kb on - strand at 779.133 kb on - strand at 779.133 kb on - strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.331 kb on + strand at 779.335 kb on + strand at 779.336 kb on - strand at 779.409 kb on + strand, within yedP at 779.410 kb on - strand, within yedP at 779.463 kb on - strand, within yedP at 779.547 kb on + strand, within yedP at 779.548 kb on - strand, within yedP at 779.581 kb on - strand, within yedP at 779.581 kb on - strand, within yedP at 779.581 kb on - strand, within yedP at 779.737 kb on - strand, within yedP at 779.928 kb on - strand, within yedP at 779.936 kb on + strand, within yedP at 780.237 kb on - strand at 780.383 kb on + strand, within yedQ at 780.387 kb on + strand, within yedQ at 780.452 kb on + strand, within yedQ at 780.554 kb on - strand, within yedQ at 780.556 kb on - strand, within yedQ at 780.556 kb on - strand, within yedQ at 780.556 kb on - strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.610 kb on + strand, within yedQ at 780.611 kb on - strand, within yedQ at 780.611 kb on - strand, within yedQ at 780.611 kb on - strand, within yedQ at 780.611 kb on - strand, within yedQ at 780.665 kb on + strand, within yedQ at 780.732 kb on + strand, within yedQ at 780.738 kb on - strand, within yedQ at 780.803 kb on + strand, within yedQ at 780.928 kb on + strand, within yedQ at 780.957 kb on - strand, within yedQ at 780.986 kb on + strand, within yedQ at 780.987 kb on - strand, within yedQ at 780.987 kb on - strand, within yedQ at 781.021 kb on + strand, within yedQ at 781.027 kb on + strand, within yedQ at 781.027 kb on + strand, within yedQ at 781.028 kb on - strand, within yedQ at 781.031 kb on + strand, within yedQ at 781.031 kb on + strand, within yedQ at 781.032 kb on - strand, within yedQ at 781.168 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.246 kb on + strand, within yedQ at 781.247 kb on - strand, within yedQ at 781.247 kb on - strand, within yedQ at 781.261 kb on - strand, within yedQ at 781.554 kb on - strand, within yedQ at 781.555 kb on + strand, within yedQ at 781.601 kb on + strand, within yedQ at 781.617 kb on - strand at 781.618 kb on + strand at 781.619 kb on - strand at 781.619 kb on - strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.701 kb on - strand at 781.850 kb on - strand at 781.851 kb on + strand at 781.851 kb on + strand at 781.852 kb on - strand at 781.865 kb on + strand at 781.865 kb on + strand at 781.865 kb on + strand at 781.877 kb on - strand at 781.931 kb on - strand at 781.931 kb on - strand at 781.931 kb on - strand at 781.937 kb on - strand at 782.019 kb on + strand, within yodC at 782.059 kb on - strand, within yodC at 782.093 kb on - strand, within yodC at 782.126 kb on - strand at 782.162 kb on + strand at 782.186 kb on + strand at 782.186 kb on + strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.190 kb on - strand at 782.203 kb on - strand at 782.203 kb on - strand at 782.203 kb on - strand at 782.205 kb on + strand at 782.205 kb on + strand at 782.206 kb on - strand at 782.289 kb on - strand at 782.301 kb on - strand, within yedI at 782.301 kb on - strand, within yedI at 782.304 kb on - strand, within yedI at 782.369 kb on - strand, within yedI at 782.375 kb on + strand, within yedI at 782.376 kb on - strand, within yedI at 782.468 kb on - strand, within yedI at 782.471 kb on + strand, within yedI at 782.472 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.531 kb on - strand, within yedI at 782.544 kb on - strand, within yedI at 782.554 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.666 kb on - strand, within yedI at 782.690 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.770 kb on + strand, within yedI at 782.771 kb on - strand, within yedI
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 779,107 + -2.3 779,117 - +1.9 779,133 - +0.6 779,133 - +0.7 779,331 + -0.7 779,331 + +1.7 779,331 + -1.5 779,331 + +0.4 779,331 + -1.5 779,335 + -2.0 779,336 - -0.3 779,409 + yedP MCAODC_19765 0.18 +0.3 779,410 - yedP MCAODC_19765 0.18 +0.9 779,463 - yedP MCAODC_19765 0.24 +0.1 779,547 + yedP MCAODC_19765 0.34 -3.7 779,548 - yedP MCAODC_19765 0.35 -1.6 779,581 - yedP MCAODC_19765 0.39 +0.5 779,581 - yedP MCAODC_19765 0.39 -0.9 779,581 - yedP MCAODC_19765 0.39 -2.3 779,737 - yedP MCAODC_19765 0.58 +2.2 779,928 - yedP MCAODC_19765 0.81 +2.1 779,936 + yedP MCAODC_19765 0.82 +3.0 780,237 - +1.3 780,383 + yedQ MCAODC_19770 0.18 +1.3 780,387 + yedQ MCAODC_19770 0.18 +0.2 780,452 + yedQ MCAODC_19770 0.22 +2.3 780,554 - yedQ MCAODC_19770 0.28 +0.4 780,556 - yedQ MCAODC_19770 0.28 -0.9 780,556 - yedQ MCAODC_19770 0.28 -0.1 780,556 - yedQ MCAODC_19770 0.28 +0.4 780,610 + yedQ MCAODC_19770 0.31 -1.6 780,610 + yedQ MCAODC_19770 0.31 +0.7 780,610 + yedQ MCAODC_19770 0.31 +2.5 780,610 + yedQ MCAODC_19770 0.31 -2.0 780,610 + yedQ MCAODC_19770 0.31 +0.8 780,610 + yedQ MCAODC_19770 0.31 +0.3 780,611 - yedQ MCAODC_19770 0.31 +0.7 780,611 - yedQ MCAODC_19770 0.31 -4.0 780,611 - yedQ MCAODC_19770 0.31 -0.2 780,611 - yedQ MCAODC_19770 0.31 -2.0 780,665 + yedQ MCAODC_19770 0.35 -3.5 780,732 + yedQ MCAODC_19770 0.39 -0.2 780,738 - yedQ MCAODC_19770 0.39 -1.0 780,803 + yedQ MCAODC_19770 0.43 -2.6 780,928 + yedQ MCAODC_19770 0.50 +0.2 780,957 - yedQ MCAODC_19770 0.52 +0.5 780,986 + yedQ MCAODC_19770 0.54 -2.7 780,987 - yedQ MCAODC_19770 0.54 +0.6 780,987 - yedQ MCAODC_19770 0.54 -2.4 781,021 + yedQ MCAODC_19770 0.56 -2.8 781,027 + yedQ MCAODC_19770 0.56 -0.3 781,027 + yedQ MCAODC_19770 0.56 -0.1 781,028 - yedQ MCAODC_19770 0.56 -1.7 781,031 + yedQ MCAODC_19770 0.56 +0.1 781,031 + yedQ MCAODC_19770 0.56 -2.9 781,032 - yedQ MCAODC_19770 0.56 +1.6 781,168 + yedQ MCAODC_19770 0.64 -2.7 781,246 + yedQ MCAODC_19770 0.69 -2.6 781,246 + yedQ MCAODC_19770 0.69 +0.9 781,246 + yedQ MCAODC_19770 0.69 +0.1 781,246 + yedQ MCAODC_19770 0.69 +0.7 781,247 - yedQ MCAODC_19770 0.69 +0.3 781,247 - yedQ MCAODC_19770 0.69 +2.0 781,261 - yedQ MCAODC_19770 0.70 +1.3 781,554 - yedQ MCAODC_19770 0.87 -2.1 781,555 + yedQ MCAODC_19770 0.87 -0.2 781,601 + yedQ MCAODC_19770 0.90 -2.7 781,617 - -2.0 781,618 + -2.0 781,619 - -0.7 781,619 - +1.5 781,638 + -0.1 781,638 + +1.7 781,701 - -1.9 781,850 - -2.5 781,851 + +0.6 781,851 + +1.6 781,852 - -2.0 781,865 + +0.1 781,865 + +1.5 781,865 + -3.5 781,877 - -1.7 781,931 - +1.1 781,931 - -1.6 781,931 - +0.9 781,937 - -1.0 782,019 + yodC MCAODC_19775 0.42 -0.4 782,059 - yodC MCAODC_19775 0.63 +0.6 782,093 - yodC MCAODC_19775 0.82 -2.7 782,126 - +1.2 782,162 + +1.2 782,186 + -3.3 782,186 + +0.5 782,190 - +0.8 782,190 - -0.0 782,190 - +0.9 782,190 - -0.7 782,203 - +1.3 782,203 - -1.2 782,203 - +1.0 782,205 + +1.6 782,205 + -0.5 782,206 - +0.3 782,289 - +0.7 782,301 - yedI MCAODC_19780 0.11 -0.7 782,301 - yedI MCAODC_19780 0.11 +0.7 782,304 - yedI MCAODC_19780 0.11 -2.5 782,369 - yedI MCAODC_19780 0.18 +0.2 782,375 + yedI MCAODC_19780 0.19 -0.5 782,376 - yedI MCAODC_19780 0.19 -0.3 782,468 - yedI MCAODC_19780 0.29 +0.5 782,471 + yedI MCAODC_19780 0.29 +0.2 782,472 - yedI MCAODC_19780 0.29 +0.3 782,531 - yedI MCAODC_19780 0.36 -3.3 782,531 - yedI MCAODC_19780 0.36 -2.6 782,544 - yedI MCAODC_19780 0.37 +0.2 782,554 - yedI MCAODC_19780 0.38 +1.3 782,666 - yedI MCAODC_19780 0.50 -0.0 782,666 - yedI MCAODC_19780 0.50 +1.0 782,666 - yedI MCAODC_19780 0.50 -1.3 782,690 + yedI MCAODC_19780 0.53 -2.5 782,770 + yedI MCAODC_19780 0.62 +0.1 782,770 + yedI MCAODC_19780 0.62 -2.3 782,771 - yedI MCAODC_19780 0.62 -3.7
Or see this region's nucleotide sequence