Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fliA and flgL are separated by 319 nucleotides flgL and fliD are separated by 265 nucleotides
MCAODC_19610: fliA - RNA polymerase sigma factor FliA, at 752,611 to 753,330
fliA
MCAODC_19615: flgL - flagellin FliC, at 753,650 to 755,407
flgL
MCAODC_19620: fliD - flagellar filament capping protein FliD, at 755,673 to 757,070
fliD
Position (kb) 753
754
755
756 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.660 kb on - strand at 752.733 kb on - strand, within fliA at 752.744 kb on - strand, within fliA at 752.802 kb on + strand, within fliA at 752.812 kb on + strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.813 kb on - strand, within fliA at 752.821 kb on + strand, within fliA at 753.122 kb on + strand, within fliA at 753.122 kb on + strand, within fliA at 753.123 kb on - strand, within fliA at 753.123 kb on - strand, within fliA at 753.130 kb on - strand, within fliA at 753.146 kb on - strand, within fliA at 753.155 kb on + strand, within fliA at 753.156 kb on - strand, within fliA at 753.171 kb on + strand, within fliA at 753.171 kb on + strand, within fliA at 753.172 kb on - strand, within fliA at 753.176 kb on - strand, within fliA at 753.176 kb on - strand, within fliA at 753.272 kb on + strand at 753.273 kb on - strand at 753.273 kb on - strand at 753.301 kb on + strand at 753.302 kb on - strand at 753.316 kb on - strand at 753.318 kb on - strand at 753.318 kb on - strand at 753.318 kb on - strand at 753.348 kb on + strand at 753.348 kb on + strand at 753.349 kb on - strand at 753.350 kb on + strand at 753.351 kb on - strand at 753.422 kb on + strand at 753.503 kb on - strand at 753.503 kb on - strand at 753.561 kb on - strand at 753.579 kb on + strand at 753.580 kb on - strand at 753.634 kb on - strand at 753.634 kb on - strand at 753.651 kb on + strand at 753.692 kb on - strand at 753.692 kb on - strand at 753.808 kb on + strand at 753.809 kb on - strand at 753.947 kb on - strand, within flgL at 753.991 kb on + strand, within flgL at 754.022 kb on - strand, within flgL at 754.073 kb on - strand, within flgL at 754.090 kb on + strand, within flgL at 754.091 kb on - strand, within flgL at 754.091 kb on - strand, within flgL at 754.112 kb on - strand, within flgL at 754.121 kb on - strand, within flgL at 754.131 kb on + strand, within flgL at 754.132 kb on - strand, within flgL at 754.132 kb on - strand, within flgL at 754.174 kb on + strand, within flgL at 754.174 kb on + strand, within flgL at 754.175 kb on - strand, within flgL at 754.188 kb on - strand, within flgL at 754.199 kb on - strand, within flgL at 754.205 kb on - strand, within flgL at 754.245 kb on - strand, within flgL at 754.265 kb on - strand, within flgL at 754.272 kb on + strand, within flgL at 754.276 kb on + strand, within flgL at 754.276 kb on + strand, within flgL at 754.302 kb on - strand, within flgL at 754.302 kb on - strand, within flgL at 754.339 kb on + strand, within flgL at 754.339 kb on + strand, within flgL at 754.340 kb on - strand, within flgL at 754.340 kb on - strand, within flgL at 754.341 kb on + strand, within flgL at 754.421 kb on - strand, within flgL at 754.466 kb on + strand, within flgL at 754.467 kb on - strand, within flgL at 754.467 kb on - strand, within flgL at 754.470 kb on + strand, within flgL at 754.471 kb on - strand, within flgL at 754.471 kb on - strand, within flgL at 754.471 kb on - strand, within flgL at 754.495 kb on + strand, within flgL at 754.496 kb on - strand, within flgL at 754.496 kb on - strand, within flgL at 754.529 kb on - strand, within flgL at 754.529 kb on - strand, within flgL at 754.529 kb on - strand, within flgL at 754.593 kb on - strand, within flgL at 754.664 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.696 kb on - strand, within flgL at 754.700 kb on - strand, within flgL at 754.702 kb on - strand, within flgL at 754.702 kb on - strand, within flgL at 754.763 kb on - strand, within flgL at 754.767 kb on - strand, within flgL at 754.767 kb on - strand, within flgL at 754.865 kb on - strand, within flgL at 754.868 kb on - strand, within flgL at 754.868 kb on - strand, within flgL at 754.871 kb on - strand, within flgL at 754.884 kb on - strand, within flgL at 754.884 kb on - strand, within flgL at 754.909 kb on + strand, within flgL at 755.098 kb on + strand, within flgL at 755.135 kb on - strand, within flgL at 755.142 kb on - strand, within flgL at 755.234 kb on - strand at 755.239 kb on + strand at 755.255 kb on - strand at 755.297 kb on - strand at 755.357 kb on - strand at 755.360 kb on - strand at 755.390 kb on - strand at 755.393 kb on - strand at 755.420 kb on + strand at 755.440 kb on - strand at 755.554 kb on - strand at 755.573 kb on - strand at 755.645 kb on + strand at 755.659 kb on + strand at 755.717 kb on - strand at 755.811 kb on + strand at 755.856 kb on - strand, within fliD at 756.089 kb on + strand, within fliD at 756.112 kb on + strand, within fliD at 756.276 kb on - strand, within fliD
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 752,660 - +0.9 752,660 - -1.3 752,660 - -2.1 752,660 - +1.3 752,660 - -1.4 752,733 - fliA MCAODC_19610 0.17 -3.3 752,744 - fliA MCAODC_19610 0.18 +0.9 752,802 + fliA MCAODC_19610 0.27 -1.9 752,812 + fliA MCAODC_19610 0.28 -1.7 752,813 - fliA MCAODC_19610 0.28 +1.3 752,813 - fliA MCAODC_19610 0.28 +0.1 752,813 - fliA MCAODC_19610 0.28 +0.3 752,813 - fliA MCAODC_19610 0.28 +0.3 752,813 - fliA MCAODC_19610 0.28 +0.5 752,821 + fliA MCAODC_19610 0.29 +0.5 753,122 + fliA MCAODC_19610 0.71 -0.0 753,122 + fliA MCAODC_19610 0.71 -2.8 753,123 - fliA MCAODC_19610 0.71 +0.8 753,123 - fliA MCAODC_19610 0.71 +0.4 753,130 - fliA MCAODC_19610 0.72 -0.3 753,146 - fliA MCAODC_19610 0.74 -3.4 753,155 + fliA MCAODC_19610 0.76 +0.7 753,156 - fliA MCAODC_19610 0.76 -1.6 753,171 + fliA MCAODC_19610 0.78 +1.1 753,171 + fliA MCAODC_19610 0.78 +1.1 753,172 - fliA MCAODC_19610 0.78 +1.1 753,176 - fliA MCAODC_19610 0.78 +1.0 753,176 - fliA MCAODC_19610 0.78 -1.6 753,272 + +1.3 753,273 - -0.4 753,273 - -0.2 753,301 + -2.3 753,302 - +0.9 753,316 - +1.0 753,318 - -1.9 753,318 - +0.3 753,318 - -1.0 753,348 + +0.3 753,348 + -3.2 753,349 - +0.8 753,350 + -0.4 753,351 - +0.2 753,422 + -2.1 753,503 - -1.6 753,503 - +0.0 753,561 - -0.6 753,579 + -0.6 753,580 - -0.3 753,634 - -0.0 753,634 - -0.5 753,651 + -2.0 753,692 - -0.4 753,692 - +1.0 753,808 + +2.6 753,809 - +0.1 753,947 - flgL MCAODC_19615 0.17 -2.3 753,991 + flgL MCAODC_19615 0.19 -0.9 754,022 - flgL MCAODC_19615 0.21 +1.6 754,073 - flgL MCAODC_19615 0.24 -0.1 754,090 + flgL MCAODC_19615 0.25 -1.2 754,091 - flgL MCAODC_19615 0.25 +2.5 754,091 - flgL MCAODC_19615 0.25 -2.5 754,112 - flgL MCAODC_19615 0.26 -1.7 754,121 - flgL MCAODC_19615 0.27 -0.4 754,131 + flgL MCAODC_19615 0.27 +0.7 754,132 - flgL MCAODC_19615 0.27 +1.5 754,132 - flgL MCAODC_19615 0.27 -0.7 754,174 + flgL MCAODC_19615 0.30 +1.9 754,174 + flgL MCAODC_19615 0.30 +0.6 754,175 - flgL MCAODC_19615 0.30 -3.0 754,188 - flgL MCAODC_19615 0.31 -1.5 754,199 - flgL MCAODC_19615 0.31 -0.9 754,205 - flgL MCAODC_19615 0.32 -0.2 754,245 - flgL MCAODC_19615 0.34 +1.4 754,265 - flgL MCAODC_19615 0.35 -0.6 754,272 + flgL MCAODC_19615 0.35 +0.8 754,276 + flgL MCAODC_19615 0.36 +0.3 754,276 + flgL MCAODC_19615 0.36 -1.7 754,302 - flgL MCAODC_19615 0.37 -1.2 754,302 - flgL MCAODC_19615 0.37 -0.2 754,339 + flgL MCAODC_19615 0.39 -1.1 754,339 + flgL MCAODC_19615 0.39 -1.9 754,340 - flgL MCAODC_19615 0.39 -2.7 754,340 - flgL MCAODC_19615 0.39 +1.0 754,341 + flgL MCAODC_19615 0.39 +0.4 754,421 - flgL MCAODC_19615 0.44 -0.5 754,466 + flgL MCAODC_19615 0.46 -2.5 754,467 - flgL MCAODC_19615 0.46 +1.9 754,467 - flgL MCAODC_19615 0.46 -0.2 754,470 + flgL MCAODC_19615 0.47 -2.3 754,471 - flgL MCAODC_19615 0.47 +0.6 754,471 - flgL MCAODC_19615 0.47 +0.5 754,471 - flgL MCAODC_19615 0.47 +0.3 754,495 + flgL MCAODC_19615 0.48 -3.1 754,496 - flgL MCAODC_19615 0.48 -2.7 754,496 - flgL MCAODC_19615 0.48 +2.9 754,529 - flgL MCAODC_19615 0.50 -1.2 754,529 - flgL MCAODC_19615 0.50 +0.6 754,529 - flgL MCAODC_19615 0.50 -3.0 754,593 - flgL MCAODC_19615 0.54 -0.6 754,664 - flgL MCAODC_19615 0.58 +0.3 754,696 - flgL MCAODC_19615 0.59 +1.3 754,696 - flgL MCAODC_19615 0.59 -2.9 754,696 - flgL MCAODC_19615 0.59 -0.2 754,696 - flgL MCAODC_19615 0.59 +0.3 754,696 - flgL MCAODC_19615 0.59 -2.1 754,696 - flgL MCAODC_19615 0.59 +0.5 754,696 - flgL MCAODC_19615 0.59 +0.4 754,700 - flgL MCAODC_19615 0.60 -1.8 754,702 - flgL MCAODC_19615 0.60 +1.2 754,702 - flgL MCAODC_19615 0.60 -3.6 754,763 - flgL MCAODC_19615 0.63 +0.2 754,767 - flgL MCAODC_19615 0.64 +1.5 754,767 - flgL MCAODC_19615 0.64 -1.2 754,865 - flgL MCAODC_19615 0.69 +0.1 754,868 - flgL MCAODC_19615 0.69 -0.5 754,868 - flgL MCAODC_19615 0.69 +1.0 754,871 - flgL MCAODC_19615 0.69 -2.6 754,884 - flgL MCAODC_19615 0.70 +2.0 754,884 - flgL MCAODC_19615 0.70 -0.1 754,909 + flgL MCAODC_19615 0.72 +0.6 755,098 + flgL MCAODC_19615 0.82 -0.9 755,135 - flgL MCAODC_19615 0.84 +0.2 755,142 - flgL MCAODC_19615 0.85 +0.0 755,234 - -0.3 755,239 + -0.9 755,255 - +0.1 755,297 - +0.8 755,357 - -2.7 755,360 - -1.5 755,390 - +0.7 755,393 - +0.4 755,420 + -3.9 755,440 - -1.2 755,554 - +0.2 755,573 - +0.8 755,645 + -0.8 755,659 + +2.0 755,717 - -0.3 755,811 + -4.6 755,856 - fliD MCAODC_19620 0.13 +2.5 756,089 + fliD MCAODC_19620 0.30 +0.8 756,112 + fliD MCAODC_19620 0.31 -0.1 756,276 - fliD MCAODC_19620 0.43 -1.0
Or see this region's nucleotide sequence