Strain Fitness in Escherichia coli ECRC101 around MCAODC_19075

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzwf and MCAODC_19075 are separated by 165 nucleotidesMCAODC_19075 and hexR are separated by 22 nucleotides MCAODC_19070: zwf - glucose-6-phosphate dehydrogenase, at 665,937 to 667,412 zwf MCAODC_19075: MCAODC_19075 - hypothetical protein, at 667,578 to 667,727 _19075 MCAODC_19080: hexR - DNA-binding transcriptional regulator HexR, at 667,750 to 668,619 hexR Position (kb) 667 668Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 667.322 kb on - strandat 667.425 kb on - strandat 667.430 kb on - strandat 667.446 kb on - strandat 667.446 kb on - strandat 667.446 kb on - strandat 667.446 kb on - strandat 667.458 kb on - strandat 667.458 kb on - strandat 667.458 kb on - strandat 667.458 kb on - strandat 667.513 kb on - strandat 667.542 kb on - strandat 667.596 kb on + strand, within MCAODC_19075at 667.619 kb on + strand, within MCAODC_19075at 667.660 kb on - strand, within MCAODC_19075at 667.677 kb on + strand, within MCAODC_19075at 667.677 kb on + strand, within MCAODC_19075at 667.677 kb on + strand, within MCAODC_19075at 667.677 kb on + strand, within MCAODC_19075at 667.677 kb on + strand, within MCAODC_19075at 667.987 kb on + strand, within hexRat 667.988 kb on - strand, within hexRat 668.042 kb on + strand, within hexRat 668.193 kb on + strand, within hexRat 668.193 kb on + strand, within hexRat 668.193 kb on + strand, within hexRat 668.235 kb on + strand, within hexRat 668.235 kb on + strand, within hexRat 668.358 kb on + strand, within hexRat 668.359 kb on - strand, within hexRat 668.439 kb on + strand, within hexRat 668.449 kb on + strand, within hexRat 668.449 kb on + strand, within hexRat 668.449 kb on + strand, within hexRat 668.449 kb on + strand, within hexRat 668.449 kb on + strand, within hexRat 668.450 kb on - strand, within hexRat 668.451 kb on + strand, within hexRat 668.451 kb on + strand, within hexRat 668.451 kb on + strand, within hexRat 668.452 kb on - strand, within hexRat 668.489 kb on + strand, within hexRat 668.489 kb on + strand, within hexRat 668.489 kb on + strand, within hexRat 668.490 kb on - strand, within hexRat 668.541 kb on + strandat 668.541 kb on + strandat 668.541 kb on + strandat 668.598 kb on + strandat 668.638 kb on + strandat 668.644 kb on + strandat 668.646 kb on + strandat 668.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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667,322 - +0.1
667,425 - -0.0
667,430 - -3.0
667,446 - +1.8
667,446 - +1.4
667,446 - +1.8
667,446 - +1.8
667,458 - +0.8
667,458 - +0.0
667,458 - +0.0
667,458 - +1.0
667,513 - +1.5
667,542 - -0.3
667,596 + MCAODC_19075 0.12 -1.1
667,619 + MCAODC_19075 0.27 -2.4
667,660 - MCAODC_19075 0.55 -1.4
667,677 + MCAODC_19075 0.66 +0.4
667,677 + MCAODC_19075 0.66 -1.2
667,677 + MCAODC_19075 0.66 +2.1
667,677 + MCAODC_19075 0.66 -0.1
667,677 + MCAODC_19075 0.66 -3.3
667,987 + hexR MCAODC_19080 0.27 +0.3
667,988 - hexR MCAODC_19080 0.27 +0.6
668,042 + hexR MCAODC_19080 0.34 -3.7
668,193 + hexR MCAODC_19080 0.51 +0.6
668,193 + hexR MCAODC_19080 0.51 -0.5
668,193 + hexR MCAODC_19080 0.51 -1.6
668,235 + hexR MCAODC_19080 0.56 -4.7
668,235 + hexR MCAODC_19080 0.56 +2.0
668,358 + hexR MCAODC_19080 0.70 +0.3
668,359 - hexR MCAODC_19080 0.70 -1.4
668,439 + hexR MCAODC_19080 0.79 +0.1
668,449 + hexR MCAODC_19080 0.80 -0.4
668,449 + hexR MCAODC_19080 0.80 +0.3
668,449 + hexR MCAODC_19080 0.80 -0.3
668,449 + hexR MCAODC_19080 0.80 +1.1
668,449 + hexR MCAODC_19080 0.80 +0.0
668,450 - hexR MCAODC_19080 0.80 -1.1
668,451 + hexR MCAODC_19080 0.81 +0.5
668,451 + hexR MCAODC_19080 0.81 -0.9
668,451 + hexR MCAODC_19080 0.81 -2.1
668,452 - hexR MCAODC_19080 0.81 -1.5
668,489 + hexR MCAODC_19080 0.85 +0.5
668,489 + hexR MCAODC_19080 0.85 +0.6
668,489 + hexR MCAODC_19080 0.85 +0.2
668,490 - hexR MCAODC_19080 0.85 -0.5
668,541 + -1.9
668,541 + -0.0
668,541 + +1.9
668,598 + +0.7
668,638 + -1.8
668,644 + +0.6
668,646 + -1.1
668,665 + +0.4

Or see this region's nucleotide sequence