Strain Fitness in Escherichia coli ECRC101 around MCAODC_18280

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaroH and ydiE are separated by 131 nucleotidesydiE and selO are separated by 3 nucleotides MCAODC_18275: aroH - 3-deoxy-7-phosphoheptulonate synthase AroH, at 517,417 to 518,463 aroH MCAODC_18280: ydiE - Uncharacterized protein YdiE, at 518,595 to 518,786 ydiE MCAODC_18285: selO - protein adenylyltransferase SelO, at 518,790 to 520,226 selO Position (kb) 518 519Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 517.694 kb on - strand, within aroHat 517.961 kb on + strand, within aroHat 518.034 kb on + strand, within aroHat 518.034 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.074 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.106 kb on + strand, within aroHat 518.109 kb on + strand, within aroHat 518.109 kb on + strand, within aroHat 518.110 kb on - strand, within aroHat 518.110 kb on - strand, within aroHat 518.220 kb on + strand, within aroHat 518.266 kb on - strand, within aroHat 518.371 kb on + strandat 518.602 kb on - strandat 518.845 kb on + strandat 518.845 kb on + strandat 518.846 kb on - strandat 519.193 kb on - strand, within selOat 519.278 kb on - strand, within selOat 519.278 kb on - strand, within selOat 519.307 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.346 kb on - strand, within selOat 519.431 kb on - strand, within selOat 519.495 kb on - strand, within selOat 519.551 kb on + strand, within selOat 519.552 kb on - strand, within selOat 519.584 kb on - strand, within selOat 519.780 kb on - strand, within selO

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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517,694 - aroH MCAODC_18275 0.26 -0.2
517,961 + aroH MCAODC_18275 0.52 +0.2
518,034 + aroH MCAODC_18275 0.59 -0.9
518,034 + aroH MCAODC_18275 0.59 -4.6
518,074 + aroH MCAODC_18275 0.63 -2.1
518,074 + aroH MCAODC_18275 0.63 -2.1
518,074 + aroH MCAODC_18275 0.63 -3.5
518,106 + aroH MCAODC_18275 0.66 -2.5
518,106 + aroH MCAODC_18275 0.66 -2.4
518,106 + aroH MCAODC_18275 0.66 -0.2
518,109 + aroH MCAODC_18275 0.66 -3.2
518,109 + aroH MCAODC_18275 0.66 +0.1
518,110 - aroH MCAODC_18275 0.66 -1.1
518,110 - aroH MCAODC_18275 0.66 -4.1
518,220 + aroH MCAODC_18275 0.77 -1.5
518,266 - aroH MCAODC_18275 0.81 -2.9
518,371 + -4.8
518,602 - -0.9
518,845 + -4.3
518,845 + +1.1
518,846 - -4.0
519,193 - selO MCAODC_18285 0.28 +0.6
519,278 - selO MCAODC_18285 0.34 -3.6
519,278 - selO MCAODC_18285 0.34 +2.6
519,307 - selO MCAODC_18285 0.36 +0.8
519,346 - selO MCAODC_18285 0.39 +0.6
519,346 - selO MCAODC_18285 0.39 -1.1
519,431 - selO MCAODC_18285 0.45 +0.7
519,495 - selO MCAODC_18285 0.49 -1.5
519,551 + selO MCAODC_18285 0.53 -0.2
519,552 - selO MCAODC_18285 0.53 +2.1
519,584 - selO MCAODC_18285 0.55 +1.3
519,780 - selO MCAODC_18285 0.69 +0.3

Or see this region's nucleotide sequence