Strain Fitness in Escherichia coli ECRC101 around MCAODC_17585

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_17575 and tnp-IS3 are separated by 5 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotidestnp-IS3 and MCAODC_17590 overlap by 35 nucleotides MCAODC_17575: MCAODC_17575 - exonuclease, at 379,321 to 380,451 _17575 MCAODC_17580: tnp-IS3 - IS3 family transposase, at 380,457 to 380,783 tnp-IS3 MCAODC_17585: tnp-IS3 - IS3 family transposase, at 380,783 to 381,670 tnp-IS3 MCAODC_17590: MCAODC_17590 - exodeoxyribonuclease VIII, at 381,636 to 383,105 _17590 Position (kb) 380 381 382Strain fitness (log2 ratio) -1 0 1 2at 381.805 kb on - strand, within MCAODC_17590at 381.805 kb on - strand, within MCAODC_17590at 382.353 kb on + strand, within MCAODC_17590at 382.422 kb on - strand, within MCAODC_17590at 382.608 kb on - strand, within MCAODC_17590

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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381,805 - MCAODC_17590 0.11 -1.5
381,805 - MCAODC_17590 0.11 -1.4
382,353 + MCAODC_17590 0.49 -0.2
382,422 - MCAODC_17590 0.53 +2.3
382,608 - MCAODC_17590 0.66 -0.7

Or see this region's nucleotide sequence