Strain Fitness in Escherichia coli ECRC101 around MCAODC_16570

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnH and fdnI overlap by 8 nucleotidesfdnI and yddM are separated by 227 nucleotidesyddM and adhP are separated by 145 nucleotides MCAODC_16560: fdnH - formate dehydrogenase N subunit beta, at 209,456 to 210,340 fdnH MCAODC_16565: fdnI - formate dehydrogenase-N subunit gamma, at 210,333 to 210,986 fdnI MCAODC_16570: yddM - HigA family addiction module antitoxin, at 211,214 to 211,498 yddM MCAODC_16575: adhP - alcohol dehydrogenase AdhP, at 211,644 to 212,654 adhP Position (kb) 211 212Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 210.281 kb on + strandat 210.587 kb on + strand, within fdnIat 210.601 kb on + strand, within fdnIat 210.635 kb on + strand, within fdnIat 210.635 kb on + strand, within fdnIat 210.653 kb on + strand, within fdnIat 210.731 kb on + strand, within fdnIat 210.839 kb on + strand, within fdnIat 210.839 kb on + strand, within fdnIat 210.839 kb on + strand, within fdnIat 210.839 kb on + strand, within fdnIat 210.840 kb on - strand, within fdnIat 210.840 kb on - strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.843 kb on + strand, within fdnIat 210.984 kb on + strandat 210.984 kb on + strandat 210.984 kb on + strandat 211.043 kb on + strandat 211.044 kb on - strandat 211.052 kb on + strandat 211.053 kb on - strandat 211.053 kb on - strandat 211.336 kb on + strand, within yddMat 211.462 kb on + strand, within yddMat 211.462 kb on + strand, within yddMat 211.463 kb on - strand, within yddMat 211.463 kb on - strand, within yddMat 211.579 kb on - strandat 211.786 kb on - strand, within adhPat 211.786 kb on - strand, within adhPat 211.862 kb on + strand, within adhPat 211.945 kb on - strand, within adhPat 212.022 kb on - strand, within adhPat 212.059 kb on - strand, within adhPat 212.153 kb on - strand, within adhPat 212.153 kb on - strand, within adhPat 212.153 kb on - strand, within adhPat 212.157 kb on - strand, within adhPat 212.204 kb on - strand, within adhPat 212.226 kb on - strand, within adhPat 212.226 kb on - strand, within adhP

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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210,281 + +0.9
210,587 + fdnI MCAODC_16565 0.39 -2.2
210,601 + fdnI MCAODC_16565 0.41 -1.5
210,635 + fdnI MCAODC_16565 0.46 +1.4
210,635 + fdnI MCAODC_16565 0.46 +1.7
210,653 + fdnI MCAODC_16565 0.49 +0.3
210,731 + fdnI MCAODC_16565 0.61 +1.0
210,839 + fdnI MCAODC_16565 0.77 -0.5
210,839 + fdnI MCAODC_16565 0.77 +1.2
210,839 + fdnI MCAODC_16565 0.77 -0.1
210,839 + fdnI MCAODC_16565 0.77 +2.7
210,840 - fdnI MCAODC_16565 0.78 -1.0
210,840 - fdnI MCAODC_16565 0.78 -0.0
210,843 + fdnI MCAODC_16565 0.78 +0.1
210,843 + fdnI MCAODC_16565 0.78 -3.1
210,843 + fdnI MCAODC_16565 0.78 +0.6
210,843 + fdnI MCAODC_16565 0.78 +0.5
210,843 + fdnI MCAODC_16565 0.78 +1.5
210,843 + fdnI MCAODC_16565 0.78 -2.1
210,984 + +1.6
210,984 + -2.6
210,984 + -0.3
211,043 + +1.2
211,044 - +0.0
211,052 + +1.5
211,053 - +3.7
211,053 - -2.7
211,336 + yddM MCAODC_16570 0.43 +1.4
211,462 + yddM MCAODC_16570 0.87 -1.8
211,462 + yddM MCAODC_16570 0.87 +1.4
211,463 - yddM MCAODC_16570 0.87 +0.6
211,463 - yddM MCAODC_16570 0.87 +1.9
211,579 - -1.0
211,786 - adhP MCAODC_16575 0.14 +0.0
211,786 - adhP MCAODC_16575 0.14 -1.8
211,862 + adhP MCAODC_16575 0.22 -0.4
211,945 - adhP MCAODC_16575 0.30 +0.4
212,022 - adhP MCAODC_16575 0.37 -1.3
212,059 - adhP MCAODC_16575 0.41 +0.4
212,153 - adhP MCAODC_16575 0.50 +0.9
212,153 - adhP MCAODC_16575 0.50 -0.9
212,153 - adhP MCAODC_16575 0.50 +0.9
212,157 - adhP MCAODC_16575 0.51 -0.9
212,204 - adhP MCAODC_16575 0.55 +1.9
212,226 - adhP MCAODC_16575 0.58 +0.4
212,226 - adhP MCAODC_16575 0.58 -3.8

Or see this region's nucleotide sequence