Strain Fitness in Escherichia coli ECRC101 around MCAODC_15845

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpuuC and puuB are separated by 1 nucleotidespuuB and puuE are separated by 37 nucleotides MCAODC_15840: puuC - aldehyde dehydrogenase PuuC, at 60,539 to 62,026 puuC MCAODC_15845: puuB - gamma-glutamylputrescine oxidase, at 62,028 to 63,308 puuB MCAODC_15850: puuE - 4-aminobutyrate transaminase, at 63,346 to 64,611 puuE Position (kb) 62 63 64Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 61.698 kb on + strand, within puuCat 62.039 kb on + strandat 62.040 kb on - strandat 62.040 kb on - strandat 62.040 kb on - strandat 62.049 kb on + strandat 62.052 kb on + strandat 62.052 kb on + strandat 62.069 kb on + strandat 62.357 kb on + strand, within puuBat 62.420 kb on + strand, within puuBat 62.568 kb on - strand, within puuBat 62.632 kb on - strand, within puuBat 62.685 kb on - strand, within puuBat 62.712 kb on + strand, within puuBat 62.713 kb on - strand, within puuBat 62.853 kb on + strand, within puuBat 62.871 kb on - strand, within puuBat 62.938 kb on - strand, within puuBat 63.089 kb on + strand, within puuBat 63.099 kb on + strand, within puuBat 63.102 kb on + strand, within puuBat 63.103 kb on - strand, within puuBat 63.115 kb on - strand, within puuBat 63.318 kb on - strandat 63.575 kb on - strand, within puuEat 63.575 kb on - strand, within puuEat 63.598 kb on + strand, within puuEat 63.599 kb on - strand, within puuEat 63.599 kb on - strand, within puuEat 63.765 kb on + strand, within puuEat 63.766 kb on - strand, within puuEat 63.769 kb on + strand, within puuEat 63.769 kb on + strand, within puuEat 63.771 kb on + strand, within puuEat 63.771 kb on + strand, within puuEat 63.772 kb on - strand, within puuEat 63.778 kb on - strand, within puuEat 63.842 kb on - strand, within puuEat 63.848 kb on + strand, within puuEat 63.849 kb on - strand, within puuEat 63.849 kb on - strand, within puuEat 63.915 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.130 kb on + strand, within puuEat 64.194 kb on + strand, within puuEat 64.195 kb on - strand, within puuE

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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61,698 + puuC MCAODC_15840 0.78 +0.9
62,039 + -5.4
62,040 - +0.9
62,040 - -3.8
62,040 - -0.3
62,049 + -1.3
62,052 + +1.5
62,052 + +2.2
62,069 + -3.3
62,357 + puuB MCAODC_15845 0.26 -0.2
62,420 + puuB MCAODC_15845 0.31 -3.6
62,568 - puuB MCAODC_15845 0.42 +0.5
62,632 - puuB MCAODC_15845 0.47 -1.7
62,685 - puuB MCAODC_15845 0.51 +1.3
62,712 + puuB MCAODC_15845 0.53 -0.8
62,713 - puuB MCAODC_15845 0.53 -3.2
62,853 + puuB MCAODC_15845 0.64 +0.1
62,871 - puuB MCAODC_15845 0.66 -4.4
62,938 - puuB MCAODC_15845 0.71 -0.2
63,089 + puuB MCAODC_15845 0.83 -0.4
63,099 + puuB MCAODC_15845 0.84 -2.6
63,102 + puuB MCAODC_15845 0.84 +0.0
63,103 - puuB MCAODC_15845 0.84 +0.9
63,115 - puuB MCAODC_15845 0.85 -3.2
63,318 - +0.7
63,575 - puuE MCAODC_15850 0.18 -1.6
63,575 - puuE MCAODC_15850 0.18 -0.3
63,598 + puuE MCAODC_15850 0.20 -1.0
63,599 - puuE MCAODC_15850 0.20 +0.9
63,599 - puuE MCAODC_15850 0.20 -3.5
63,765 + puuE MCAODC_15850 0.33 -1.5
63,766 - puuE MCAODC_15850 0.33 -1.0
63,769 + puuE MCAODC_15850 0.33 -2.8
63,769 + puuE MCAODC_15850 0.33 -0.7
63,771 + puuE MCAODC_15850 0.34 -0.9
63,771 + puuE MCAODC_15850 0.34 -1.8
63,772 - puuE MCAODC_15850 0.34 +0.3
63,778 - puuE MCAODC_15850 0.34 +0.2
63,842 - puuE MCAODC_15850 0.39 +1.4
63,848 + puuE MCAODC_15850 0.40 -2.1
63,849 - puuE MCAODC_15850 0.40 +0.2
63,849 - puuE MCAODC_15850 0.40 +0.3
63,915 + puuE MCAODC_15850 0.45 -3.0
64,130 + puuE MCAODC_15850 0.62 -1.7
64,130 + puuE MCAODC_15850 0.62 +3.6
64,130 + puuE MCAODC_15850 0.62 -0.5
64,194 + puuE MCAODC_15850 0.67 -0.5
64,195 - puuE MCAODC_15850 0.67 +0.6

Or see this region's nucleotide sequence