Strain Fitness in Escherichia coli ECRC101 around MCAODC_14330

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,815,564	+	napH	MCAODC_14320	0.26	-0.3
2,815,626	+	napH	MCAODC_14320	0.39	-0.0
2,815,655	+	napH	MCAODC_14320	0.46	+0.5
2,815,656	-	napH	MCAODC_14320	0.46	+0.2
2,815,722	+	napH	MCAODC_14320	0.61	-1.7
2,815,723	-	napH	MCAODC_14320	0.61	-1.7
2,815,831	+	napH	MCAODC_14320	0.85	-1.3
2,815,832	-	napH	MCAODC_14320	0.85	+0.1
2,815,865	+				-2.7
2,815,904	+				+1.2
2,815,908	-				+2.9
2,815,940	+				-1.7
2,815,964	+				+1.1
2,816,082	-	napC	MCAODC_14325	0.29	+0.1
2,816,100	-	napC	MCAODC_14325	0.32	+0.8
2,816,109	+	napC	MCAODC_14325	0.33	-0.0
2,816,110	-	napC	MCAODC_14325	0.33	-0.0
2,816,110	-	napC	MCAODC_14325	0.33	+2.4
2,816,118	+	napC	MCAODC_14325	0.35	+1.2
2,816,118	+	napC	MCAODC_14325	0.35	+0.8
2,816,118	+	napC	MCAODC_14325	0.35	+0.2
2,816,118	+	napC	MCAODC_14325	0.35	-2.1
2,816,119	-	napC	MCAODC_14325	0.35	-3.4
2,816,119	-	napC	MCAODC_14325	0.35	+1.1
2,816,119	-	napC	MCAODC_14325	0.35	+1.7
2,816,119	-	napC	MCAODC_14325	0.35	-3.4
2,816,119	-	napC	MCAODC_14325	0.35	-0.7
2,816,137	-	napC	MCAODC_14325	0.38	-1.9
2,816,137	-	napC	MCAODC_14325	0.38	+1.1
2,816,147	+	napC	MCAODC_14325	0.40	+0.9
2,816,210	-	napC	MCAODC_14325	0.50	+1.3
2,816,210	-	napC	MCAODC_14325	0.50	+0.9
2,816,210	-	napC	MCAODC_14325	0.50	-2.7
2,816,229	-	napC	MCAODC_14325	0.53	+0.6
2,816,229	-	napC	MCAODC_14325	0.53	-2.7
2,816,238	+	napC	MCAODC_14325	0.55	-3.0
2,816,243	+	napC	MCAODC_14325	0.56	+0.9
2,816,333	+	napC	MCAODC_14325	0.70	+0.5
2,816,334	-	napC	MCAODC_14325	0.71	+2.4
2,816,351	+	napC	MCAODC_14325	0.73	+1.4
2,816,351	+	napC	MCAODC_14325	0.73	+2.1
2,816,370	+	napC	MCAODC_14325	0.77	+0.7
2,816,370	+	napC	MCAODC_14325	0.77	+2.1
2,816,371	-	napC	MCAODC_14325	0.77	+0.3
2,816,371	-	napC	MCAODC_14325	0.77	-0.3
2,816,372	+	napC	MCAODC_14325	0.77	+0.4
2,816,372	+	napC	MCAODC_14325	0.77	-0.7
2,816,372	+	napC	MCAODC_14325	0.77	+0.2
2,816,373	-	napC	MCAODC_14325	0.77	+1.9
2,816,378	+	napC	MCAODC_14325	0.78	-0.7
2,816,378	+	napC	MCAODC_14325	0.78	+2.6
2,816,379	-	napC	MCAODC_14325	0.78	-1.7
2,816,444	+	napC	MCAODC_14325	0.89	-2.8
2,816,445	-	napC	MCAODC_14325	0.89	+0.1
2,816,464	+				+1.5
2,816,529	-				-0.3
2,816,548	+				+0.6
2,816,548	+				+0.0
2,816,576	-				+0.1
2,816,579	+				+0.3
2,816,594	+	ccmA	MCAODC_14330	0.11	+1.0
2,816,617	+	ccmA	MCAODC_14330	0.14	+2.7
2,816,743	-	ccmA	MCAODC_14330	0.35	-0.7
2,816,743	-	ccmA	MCAODC_14330	0.35	-1.2
2,817,032	+	ccmA	MCAODC_14330	0.81	+1.1
2,817,044	+	ccmA	MCAODC_14330	0.83	-1.3
2,817,075	-	ccmA	MCAODC_14330	0.88	+0.8
2,817,143	-				+1.1
2,817,235	-	ccmB	MCAODC_14335	0.14	+1.4
2,817,235	-	ccmB	MCAODC_14335	0.14	-0.8
2,817,235	-	ccmB	MCAODC_14335	0.14	+2.8
2,817,235	-	ccmB	MCAODC_14335	0.14	+0.5
2,817,235	-	ccmB	MCAODC_14335	0.14	-2.3
2,817,286	+	ccmB	MCAODC_14335	0.22	-2.2
2,817,287	-	ccmB	MCAODC_14335	0.22	-0.7
2,817,287	-	ccmB	MCAODC_14335	0.22	+2.0
2,817,287	-	ccmB	MCAODC_14335	0.22	-0.9
2,817,301	+	ccmB	MCAODC_14335	0.24	+1.6
2,817,302	-	ccmB	MCAODC_14335	0.24	+0.6
2,817,487	-	ccmB	MCAODC_14335	0.52	+0.6
2,817,512	+	ccmB	MCAODC_14335	0.56	-1.8
2,817,512	+	ccmB	MCAODC_14335	0.56	-2.2
2,817,541	-	ccmB	MCAODC_14335	0.60	-3.1
2,817,604	+	ccmB	MCAODC_14335	0.70	+0.2
2,817,605	-	ccmB	MCAODC_14335	0.70	+0.9
2,817,630	+	ccmB	MCAODC_14335	0.73	+1.2
2,817,630	+	ccmB	MCAODC_14335	0.73	+0.9
2,817,649	+	ccmB	MCAODC_14335	0.76	+1.7
2,817,695	-	ccmB	MCAODC_14335	0.83	-0.7
2,817,716	+	ccmB	MCAODC_14335	0.86	+1.3
2,817,717	-	ccmB	MCAODC_14335	0.87	-0.8
2,817,759	+				-0.4
2,817,759	+				+0.6
2,817,759	+				-1.0
2,817,846	+				+0.8
2,817,846	+				-0.6
2,817,847	-				+1.7
2,817,847	-				+0.8
2,817,909	+				-1.3
2,817,910	-				+0.3
2,817,911	+				-0.8
2,817,935	+	ccmC	MCAODC_14340	0.12	+2.2
2,818,002	+	ccmC	MCAODC_14340	0.21	-0.7
2,818,002	+	ccmC	MCAODC_14340	0.21	+1.1
2,818,002	+	ccmC	MCAODC_14340	0.21	+1.0
2,818,002	+	ccmC	MCAODC_14340	0.21	-0.4
2,818,002	+	ccmC	MCAODC_14340	0.21	+0.2
2,818,003	-	ccmC	MCAODC_14340	0.21	-3.1
2,818,003	-	ccmC	MCAODC_14340	0.21	-0.6
2,818,003	-	ccmC	MCAODC_14340	0.21	+0.4
2,818,003	-	ccmC	MCAODC_14340	0.21	-0.2
2,818,014	+	ccmC	MCAODC_14340	0.23	+1.6
2,818,014	+	ccmC	MCAODC_14340	0.23	-0.4
2,818,015	-	ccmC	MCAODC_14340	0.23	-0.4
2,818,015	-	ccmC	MCAODC_14340	0.23	+1.6
2,818,018	+	ccmC	MCAODC_14340	0.23	-0.5
2,818,018	+	ccmC	MCAODC_14340	0.23	+0.4
2,818,057	+	ccmC	MCAODC_14340	0.28	+1.2
2,818,057	+	ccmC	MCAODC_14340	0.28	-0.5
2,818,057	+	ccmC	MCAODC_14340	0.28	+0.0
2,818,057	+	ccmC	MCAODC_14340	0.28	-0.6
2,818,058	-	ccmC	MCAODC_14340	0.29	+0.2
2,818,058	-	ccmC	MCAODC_14340	0.29	-0.7
2,818,058	-	ccmC	MCAODC_14340	0.29	-0.3
2,818,058	-	ccmC	MCAODC_14340	0.29	-0.6
2,818,058	-	ccmC	MCAODC_14340	0.29	-1.0
2,818,058	-	ccmC	MCAODC_14340	0.29	-0.3
2,818,083	+	ccmC	MCAODC_14340	0.32	+1.4