Strain Fitness in Escherichia coli ECRC101 around MCAODC_14005

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,742,934	+	menE	MCAODC_13995	0.54	-2.2
2,742,935	-	menE	MCAODC_13995	0.54	+0.4
2,743,109	+	menE	MCAODC_13995	0.67	-0.7
2,743,109	+	menE	MCAODC_13995	0.67	-0.6
2,743,109	+	menE	MCAODC_13995	0.67	+0.7
2,743,109	+	menE	MCAODC_13995	0.67	-3.3
2,743,109	+	menE	MCAODC_13995	0.67	-2.9
2,743,110	-	menE	MCAODC_13995	0.67	-1.4
2,743,149	+	menE	MCAODC_13995	0.70	+0.2
2,743,182	-	menE	MCAODC_13995	0.72	+1.1
2,743,256	-	menE	MCAODC_13995	0.78	+0.6
2,743,264	+	menE	MCAODC_13995	0.78	+0.3
2,743,287	-	menE	MCAODC_13995	0.80	-0.5
2,743,312	+	menE	MCAODC_13995	0.82	+0.2
2,743,313	-	menE	MCAODC_13995	0.82	+2.4
2,743,401	+	menE	MCAODC_13995	0.88	-2.7
2,743,442	+				-0.3
2,743,443	-				-2.1
2,743,532	-				+1.2
2,743,562	-				-0.1
2,743,617	-				-2.8
2,743,662	+				-3.4
2,743,665	+				-1.6
2,743,665	+				-2.6
2,743,665	+				-0.2
2,743,710	+	pmrD	MCAODC_14000	0.15	-0.5
2,743,711	-	pmrD	MCAODC_14000	0.16	-0.3
2,743,721	+	pmrD	MCAODC_14000	0.19	-1.2
2,743,721	+	pmrD	MCAODC_14000	0.19	+2.4
2,743,721	+	pmrD	MCAODC_14000	0.19	-0.9
2,743,721	+	pmrD	MCAODC_14000	0.19	-0.8
2,743,721	+	pmrD	MCAODC_14000	0.19	+0.1
2,743,721	+	pmrD	MCAODC_14000	0.19	-2.2
2,743,725	+	pmrD	MCAODC_14000	0.21	-0.8
2,743,725	+	pmrD	MCAODC_14000	0.21	+1.0
2,743,726	-	pmrD	MCAODC_14000	0.21	-0.0
2,743,726	-	pmrD	MCAODC_14000	0.21	-0.1
2,743,829	-	pmrD	MCAODC_14000	0.60	-4.3
2,743,833	+	pmrD	MCAODC_14000	0.61	-1.2
2,743,833	+	pmrD	MCAODC_14000	0.61	+0.6
2,743,834	-	pmrD	MCAODC_14000	0.62	-0.9
2,743,834	-	pmrD	MCAODC_14000	0.62	+0.9
2,743,834	-	pmrD	MCAODC_14000	0.62	+1.0
2,743,834	-	pmrD	MCAODC_14000	0.62	-2.2
2,743,837	-	pmrD	MCAODC_14000	0.63	-2.4
2,743,837	-	pmrD	MCAODC_14000	0.63	+0.5
2,743,882	+	pmrD	MCAODC_14000	0.80	-0.1
2,743,882	+	pmrD	MCAODC_14000	0.80	-0.2
2,743,882	+	pmrD	MCAODC_14000	0.80	+0.4
2,743,883	-	pmrD	MCAODC_14000	0.80	-2.3
2,743,884	+	pmrD	MCAODC_14000	0.81	-1.2
2,743,979	+	arnF	MCAODC_14005	0.13	+1.5
2,743,980	-	arnF	MCAODC_14005	0.13	+1.5
2,743,983	-	arnF	MCAODC_14005	0.14	-2.0
2,743,989	+	arnF	MCAODC_14005	0.16	-0.5
2,744,037	+	arnF	MCAODC_14005	0.28	-2.2
2,744,038	-	arnF	MCAODC_14005	0.28	-0.3
2,744,065	+	arnF	MCAODC_14005	0.35	+0.9
2,744,065	+	arnF	MCAODC_14005	0.35	-1.7
2,744,065	+	arnF	MCAODC_14005	0.35	+1.2
2,744,066	-	arnF	MCAODC_14005	0.35	+0.1
2,744,066	-	arnF	MCAODC_14005	0.35	-0.5
2,744,066	-	arnF	MCAODC_14005	0.35	+0.9
2,744,066	-	arnF	MCAODC_14005	0.35	-3.6
2,744,066	-	arnF	MCAODC_14005	0.35	-0.7
2,744,073	-	arnF	MCAODC_14005	0.37	+1.1
2,744,086	+	arnF	MCAODC_14005	0.41	+0.2
2,744,097	+	arnF	MCAODC_14005	0.43	+0.5
2,744,109	-	arnF	MCAODC_14005	0.47	+0.6
2,744,112	+	arnF	MCAODC_14005	0.47	-0.8
2,744,113	-	arnF	MCAODC_14005	0.48	-0.7
2,744,164	-	arnF	MCAODC_14005	0.61	-4.4
2,744,217	+	arnF	MCAODC_14005	0.74	-0.8
2,744,262	+	arnF	MCAODC_14005	0.86	+0.2
2,744,262	+	arnF	MCAODC_14005	0.86	+0.1
2,744,263	-	arnF	MCAODC_14005	0.86	+2.1
2,744,283	-				+2.0
2,744,317	-				-3.4
2,744,350	+	arnE	MCAODC_14010	0.10	+1.2
2,744,351	-	arnE	MCAODC_14010	0.11	-0.3
2,744,441	+	arnE	MCAODC_14010	0.38	-1.7
2,744,442	-	arnE	MCAODC_14010	0.38	-0.4
2,744,442	-	arnE	MCAODC_14010	0.38	+1.0
2,744,442	-	arnE	MCAODC_14010	0.38	-0.9
2,744,442	-	arnE	MCAODC_14010	0.38	+0.4
2,744,458	+	arnE	MCAODC_14010	0.43	+0.0
2,744,459	-	arnE	MCAODC_14010	0.43	-1.1
2,744,459	-	arnE	MCAODC_14010	0.43	-1.8
2,744,459	-	arnE	MCAODC_14010	0.43	-0.3
2,744,545	+	arnE	MCAODC_14010	0.68	+0.5
2,744,545	+	arnE	MCAODC_14010	0.68	+0.1
2,744,546	-	arnE	MCAODC_14010	0.69	+3.1
2,744,546	-	arnE	MCAODC_14010	0.69	+1.6
2,744,615	-	arnE	MCAODC_14010	0.89	-1.5
2,744,615	-	arnE	MCAODC_14010	0.89	+0.1
2,744,633	+				-1.5
2,744,634	-				-1.8
2,744,634	-				+0.9
2,744,661	-				-0.3
2,744,788	-				+0.2
2,744,788	-				+0.9
2,744,844	+	arnT	MCAODC_14015	0.12	+0.0
2,744,844	+	arnT	MCAODC_14015	0.12	-1.7
2,744,845	-	arnT	MCAODC_14015	0.12	+1.3
2,744,845	-	arnT	MCAODC_14015	0.12	+1.2
2,744,852	+	arnT	MCAODC_14015	0.12	-0.3
2,744,876	+	arnT	MCAODC_14015	0.14	-0.5
2,744,877	-	arnT	MCAODC_14015	0.14	+0.6
2,744,935	-	arnT	MCAODC_14015	0.17	+1.9
2,744,946	+	arnT	MCAODC_14015	0.18	+0.2
2,744,947	-	arnT	MCAODC_14015	0.18	-0.9
2,744,947	-	arnT	MCAODC_14015	0.18	-0.0
2,745,100	+	arnT	MCAODC_14015	0.27	+0.6
2,745,108	-	arnT	MCAODC_14015	0.28	+1.7
2,745,161	+	arnT	MCAODC_14015	0.31	-2.3
2,745,162	-	arnT	MCAODC_14015	0.31	+1.9
2,745,162	-	arnT	MCAODC_14015	0.31	-1.0
2,745,162	-	arnT	MCAODC_14015	0.31	+0.7
2,745,256	-	arnT	MCAODC_14015	0.37	+1.0
2,745,268	-	arnT	MCAODC_14015	0.38	-0.9
2,745,312	-	arnT	MCAODC_14015	0.40	+0.5
2,745,312	-	arnT	MCAODC_14015	0.40	-1.6