Strain Fitness in Escherichia coli ECRC101 around MCAODC_11435

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
2,269,144	+	gabT	MCAODC_11430	0.30	-1.7
2,269,144	+	gabT	MCAODC_11430	0.30	+0.8
2,269,145	-	gabT	MCAODC_11430	0.30	-2.9
2,269,145	-	gabT	MCAODC_11430	0.30	+3.0
2,269,145	-	gabT	MCAODC_11430	0.30	-2.6
2,269,145	-	gabT	MCAODC_11430	0.30	+1.2
2,269,145	-	gabT	MCAODC_11430	0.30	-0.2
2,269,363	-	gabT	MCAODC_11430	0.47	-1.5
2,269,479	-	gabT	MCAODC_11430	0.56	-0.6
2,269,526	-	gabT	MCAODC_11430	0.60	+0.6
2,269,606	+	gabT	MCAODC_11430	0.66	-1.6
2,269,607	-	gabT	MCAODC_11430	0.66	+1.8
2,269,713	-	gabT	MCAODC_11430	0.75	+0.4
2,269,761	-	gabT	MCAODC_11430	0.78	+0.1
2,269,790	-	gabT	MCAODC_11430	0.81	+0.2
2,269,909	+				+0.5
2,269,909	+				+1.0
2,269,910	-				-2.8
2,269,910	-				-2.6
2,270,016	+				-0.9
2,270,025	-				-0.9
2,270,068	-				+0.5
2,270,069	+				-0.9
2,270,069	+				-2.3
2,270,080	+				-2.0
2,270,081	-				-0.0
2,270,230	+	gabD	MCAODC_11435	0.12	-0.4
2,270,231	-	gabD	MCAODC_11435	0.12	+0.6
2,270,243	+	gabD	MCAODC_11435	0.13	-1.5
2,270,244	-	gabD	MCAODC_11435	0.13	+1.1
2,270,438	-	gabD	MCAODC_11435	0.27	+1.2
2,270,438	-	gabD	MCAODC_11435	0.27	-0.6
2,270,469	+	gabD	MCAODC_11435	0.29	+1.2
2,270,470	-	gabD	MCAODC_11435	0.29	+0.3
2,270,470	-	gabD	MCAODC_11435	0.29	+0.8
2,270,470	-	gabD	MCAODC_11435	0.29	-1.7
2,270,612	+	gabD	MCAODC_11435	0.39	+0.3
2,270,612	+	gabD	MCAODC_11435	0.39	+1.1
2,270,612	+	gabD	MCAODC_11435	0.39	+1.7
2,270,612	+	gabD	MCAODC_11435	0.39	-0.2
2,270,612	+	gabD	MCAODC_11435	0.39	+1.1
2,270,612	+	gabD	MCAODC_11435	0.39	+0.4
2,270,613	-	gabD	MCAODC_11435	0.39	-1.4
2,270,613	-	gabD	MCAODC_11435	0.39	+0.6
2,270,880	+	gabD	MCAODC_11435	0.57	+0.1
2,271,153	+	gabD	MCAODC_11435	0.76	+1.3
2,271,153	+	gabD	MCAODC_11435	0.76	-0.1
2,271,167	+	gabD	MCAODC_11435	0.77	-1.4
2,271,168	-	gabD	MCAODC_11435	0.77	+1.0
2,271,201	+	gabD	MCAODC_11435	0.79	+0.2
2,271,475	+				-0.4
2,271,503	-				-0.9
2,271,503	-				+0.9
2,271,503	-				+1.5
2,271,503	-				+1.2
2,271,503	-				+1.6
2,271,503	-				-2.2
2,271,522	+				-0.3
2,271,542	+				-1.9
2,271,543	-				+1.2
2,271,556	+				+0.1
2,271,556	+				+0.2
2,271,556	+				+0.6
2,271,556	+				-0.1
2,271,556	+				+0.1
2,271,556	+				-1.2
2,271,556	+				-0.4
2,271,557	-				+0.5
2,271,557	-				-3.1
2,271,557	-				-0.0
2,271,587	-				-0.0
2,271,612	-				-3.4
2,271,612	-				-0.3
2,271,626	-				-2.4
2,271,805	-	lhgO	MCAODC_11440	0.22	-0.3
2,271,805	-	lhgO	MCAODC_11440	0.22	-1.1
2,271,805	-	lhgO	MCAODC_11440	0.22	-0.5
2,271,826	-	lhgO	MCAODC_11440	0.24	-1.8
2,271,872	+	lhgO	MCAODC_11440	0.28	-1.1
2,271,873	-	lhgO	MCAODC_11440	0.28	-3.3
2,271,873	-	lhgO	MCAODC_11440	0.28	-1.0
2,271,932	-	lhgO	MCAODC_11440	0.32	-0.3
2,272,079	-	lhgO	MCAODC_11440	0.44	+0.1
2,272,079	-	lhgO	MCAODC_11440	0.44	-2.5
2,272,090	+	lhgO	MCAODC_11440	0.45	+0.6
2,272,113	+	lhgO	MCAODC_11440	0.47	-1.1
2,272,136	-	lhgO	MCAODC_11440	0.48	-0.6
2,272,136	-	lhgO	MCAODC_11440	0.48	-2.9
2,272,136	-	lhgO	MCAODC_11440	0.48	-1.6
2,272,138	+	lhgO	MCAODC_11440	0.49	-1.0
2,272,198	+	lhgO	MCAODC_11440	0.53	-3.5
2,272,198	+	lhgO	MCAODC_11440	0.53	+0.5
2,272,199	-	lhgO	MCAODC_11440	0.53	-1.1
2,272,237	+	lhgO	MCAODC_11440	0.56	-1.2
2,272,237	+	lhgO	MCAODC_11440	0.56	+2.6
2,272,238	-	lhgO	MCAODC_11440	0.57	-0.2
2,272,238	-	lhgO	MCAODC_11440	0.57	-1.0
2,272,242	-	lhgO	MCAODC_11440	0.57	-2.2
2,272,242	-	lhgO	MCAODC_11440	0.57	+1.5
2,272,242	-	lhgO	MCAODC_11440	0.57	+0.8
2,272,242	-	lhgO	MCAODC_11440	0.57	-0.4
2,272,259	-	lhgO	MCAODC_11440	0.58	+0.4
2,272,259	-	lhgO	MCAODC_11440	0.58	-1.0
2,272,290	+	lhgO	MCAODC_11440	0.61	-1.9
2,272,290	+	lhgO	MCAODC_11440	0.61	+1.8
2,272,290	+	lhgO	MCAODC_11440	0.61	+1.5
2,272,291	-	lhgO	MCAODC_11440	0.61	+0.2
2,272,291	-	lhgO	MCAODC_11440	0.61	+0.8
2,272,382	-	lhgO	MCAODC_11440	0.68	-0.5
2,272,399	+	lhgO	MCAODC_11440	0.69	-1.4