Strain Fitness in Escherichia coli ECRC101 around MCAODC_09805

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,951,290	+	gshB	MCAODC_09795	0.86	-2.1
1,951,290	+	gshB	MCAODC_09795	0.86	-3.0
1,951,310	-	gshB	MCAODC_09795	0.88	+0.2
1,951,310	-	gshB	MCAODC_09795	0.88	+1.8
1,951,310	-	gshB	MCAODC_09795	0.88	-1.5
1,951,311	+	gshB	MCAODC_09795	0.88	-0.1
1,951,311	+	gshB	MCAODC_09795	0.88	-2.7
1,951,311	+	gshB	MCAODC_09795	0.88	-1.5
1,951,312	-	gshB	MCAODC_09795	0.89	-1.3
1,951,312	-	gshB	MCAODC_09795	0.89	-1.9
1,951,312	-	gshB	MCAODC_09795	0.89	-1.3
1,951,312	-	gshB	MCAODC_09795	0.89	+0.1
1,951,352	-				-3.2
1,951,422	-				-1.7
1,951,455	-				+0.1
1,951,460	+				+0.2
1,951,461	-				+0.5
1,951,461	-				-3.6
1,951,522	+	rsmE	MCAODC_09800	0.12	+0.1
1,951,536	+	rsmE	MCAODC_09800	0.14	-1.3
1,951,624	+	rsmE	MCAODC_09800	0.26	+1.1
1,951,624	+	rsmE	MCAODC_09800	0.26	+1.2
1,951,624	+	rsmE	MCAODC_09800	0.26	-1.4
1,951,624	+	rsmE	MCAODC_09800	0.26	-3.2
1,951,625	-	rsmE	MCAODC_09800	0.26	-4.2
1,951,625	-	rsmE	MCAODC_09800	0.26	-0.9
1,951,625	-	rsmE	MCAODC_09800	0.26	-2.9
1,951,625	-	rsmE	MCAODC_09800	0.26	-2.5
1,951,625	-	rsmE	MCAODC_09800	0.26	+0.8
1,951,637	-	rsmE	MCAODC_09800	0.28	-0.0
1,951,814	-	rsmE	MCAODC_09800	0.52	+2.0
1,951,843	+	rsmE	MCAODC_09800	0.56	+1.1
1,951,853	+	rsmE	MCAODC_09800	0.57	-3.5
1,951,882	+	rsmE	MCAODC_09800	0.61	+1.2
1,951,928	-	rsmE	MCAODC_09800	0.68	-1.3
1,951,928	-	rsmE	MCAODC_09800	0.68	-0.1
1,951,928	-	rsmE	MCAODC_09800	0.68	+0.6
1,952,003	-	rsmE	MCAODC_09800	0.78	-0.1
1,952,084	-	rsmE	MCAODC_09800	0.89	-0.3
1,952,084	-	rsmE	MCAODC_09800	0.89	+0.9
1,952,145	+				+0.6
1,952,146	-				+0.1
1,952,164	+				-1.4
1,952,164	+				+0.6
1,952,164	+				-0.8
1,952,164	+				+0.3
1,952,164	+				-4.8
1,952,164	+				+1.0
1,952,164	+				-0.1
1,952,165	-				-0.4
1,952,165	-				+0.4
1,952,165	-				-0.0
1,952,165	-				-2.2
1,952,165	-				-0.2
1,952,165	-				-0.1
1,952,165	-				-0.7
1,952,165	-				-2.4
1,952,199	+				-1.8
1,952,200	-				+0.5
1,952,240	+				+1.9
1,952,240	+				+1.6
1,952,240	+				+1.6
1,952,240	+				+1.8
1,952,240	+				+0.4
1,952,241	-				-2.0
1,952,241	-				-0.9
1,952,245	+				+0.1
1,952,246	-				-1.4
1,952,278	+				-0.8
1,952,278	+				+0.6
1,952,278	+				-3.2
1,952,279	-				-3.8
1,952,279	-				+0.3
1,952,279	-				+0.4
1,952,285	+				-0.3
1,952,299	-				+0.3
1,952,404	+	endA	MCAODC_09805	0.23	+1.1
1,952,404	+	endA	MCAODC_09805	0.23	-3.1
1,952,404	+	endA	MCAODC_09805	0.23	-0.9
1,952,418	-	endA	MCAODC_09805	0.25	-0.3
1,952,418	-	endA	MCAODC_09805	0.25	+1.0
1,952,419	+	endA	MCAODC_09805	0.25	-0.7
1,952,419	+	endA	MCAODC_09805	0.25	+0.0
1,952,419	+	endA	MCAODC_09805	0.25	-1.8
1,952,419	+	endA	MCAODC_09805	0.25	-2.3
1,952,419	+	endA	MCAODC_09805	0.25	-1.5
1,952,419	+	endA	MCAODC_09805	0.25	+0.5
1,952,419	+	endA	MCAODC_09805	0.25	-0.9
1,952,419	+	endA	MCAODC_09805	0.25	-0.8
1,952,419	+	endA	MCAODC_09805	0.25	-3.1
1,952,419	+	endA	MCAODC_09805	0.25	+1.7
1,952,420	-	endA	MCAODC_09805	0.25	+1.2
1,952,420	-	endA	MCAODC_09805	0.25	-0.2
1,952,420	-	endA	MCAODC_09805	0.25	+1.8
1,952,420	-	endA	MCAODC_09805	0.25	-0.3
1,952,420	-	endA	MCAODC_09805	0.25	-0.7
1,952,420	-	endA	MCAODC_09805	0.25	-0.5
1,952,420	-	endA	MCAODC_09805	0.25	+0.1
1,952,420	-	endA	MCAODC_09805	0.25	+1.9
1,952,420	-	endA	MCAODC_09805	0.25	+0.7
1,952,420	-	endA	MCAODC_09805	0.25	+0.6
1,952,420	-	endA	MCAODC_09805	0.25	+1.0
1,952,425	+	endA	MCAODC_09805	0.26	-1.0
1,952,426	-	endA	MCAODC_09805	0.26	-0.9
1,952,539	+	endA	MCAODC_09805	0.42	+2.0
1,952,539	+	endA	MCAODC_09805	0.42	-1.5
1,952,539	+	endA	MCAODC_09805	0.42	+0.3
1,952,540	-	endA	MCAODC_09805	0.42	+0.3
1,952,540	-	endA	MCAODC_09805	0.42	+1.4
1,952,543	+	endA	MCAODC_09805	0.42	-2.8
1,952,544	-	endA	MCAODC_09805	0.42	+0.3
1,952,544	-	endA	MCAODC_09805	0.42	+1.2
1,952,544	-	endA	MCAODC_09805	0.42	-0.2
1,952,592	-	endA	MCAODC_09805	0.49	-1.5
1,952,597	+	endA	MCAODC_09805	0.50	+2.3
1,952,598	-	endA	MCAODC_09805	0.50	-0.6
1,952,598	-	endA	MCAODC_09805	0.50	-2.8
1,952,618	-	endA	MCAODC_09805	0.53	+1.1
1,952,801	+	endA	MCAODC_09805	0.79	+0.8
1,952,801	+	endA	MCAODC_09805	0.79	+0.1
1,952,801	+	endA	MCAODC_09805	0.79	-0.4
1,952,801	+	endA	MCAODC_09805	0.79	-1.1
1,952,802	-	endA	MCAODC_09805	0.79	-0.9
1,952,813	-	endA	MCAODC_09805	0.80	-2.7
1,952,820	-	endA	MCAODC_09805	0.81	+1.0
1,952,873	+	endA	MCAODC_09805	0.89	-0.1
1,952,874	-	endA	MCAODC_09805	0.89	+0.8
1,952,879	+	endA	MCAODC_09805	0.90	+0.7
1,952,879	+	endA	MCAODC_09805	0.90	-1.5
1,952,879	+	endA	MCAODC_09805	0.90	+1.1
1,952,879	+	endA	MCAODC_09805	0.90	-0.1
1,952,879	+	endA	MCAODC_09805	0.90	-3.9
1,952,880	-	endA	MCAODC_09805	0.90	-0.3
1,952,880	-	endA	MCAODC_09805	0.90	-1.0
1,952,880	-	endA	MCAODC_09805	0.90	-2.5
1,952,880	-	endA	MCAODC_09805	0.90	-0.3
1,952,934	-				+0.5
1,952,941	+				+0.1
1,952,947	+				-0.2
1,952,947	+				-1.9
1,952,947	+				+1.0
1,952,948	-				-0.6
1,952,948	-				-0.1
1,952,948	-				+0.0
1,952,948	-				+0.0
1,952,948	-				+0.5
1,952,948	-				+1.1
1,952,948	-				+0.7
1,952,957	-				+0.9
1,952,957	-				-0.5
1,952,957	-				+0.1
1,953,034	+				+1.4
1,953,034	+				-0.9
1,953,047	+				-0.3
1,953,107	-	sprT	MCAODC_09810	0.13	+2.0
1,953,115	-	sprT	MCAODC_09810	0.15	-1.6
1,953,129	+	sprT	MCAODC_09810	0.18	+0.6
1,953,129	+	sprT	MCAODC_09810	0.18	+1.3
1,953,150	+	sprT	MCAODC_09810	0.23	+1.1
1,953,150	+	sprT	MCAODC_09810	0.23	+0.9
1,953,150	+	sprT	MCAODC_09810	0.23	-1.5
1,953,150	+	sprT	MCAODC_09810	0.23	+0.5
1,953,150	+	sprT	MCAODC_09810	0.23	+0.1
1,953,150	+	sprT	MCAODC_09810	0.23	-0.4
1,953,150	+	sprT	MCAODC_09810	0.23	+0.4
1,953,150	+	sprT	MCAODC_09810	0.23	-0.2
1,953,150	+	sprT	MCAODC_09810	0.23	-0.0
1,953,151	-	sprT	MCAODC_09810	0.23	+0.2
1,953,151	-	sprT	MCAODC_09810	0.23	+0.5
1,953,151	-	sprT	MCAODC_09810	0.23	+0.7
1,953,151	-	sprT	MCAODC_09810	0.23	-0.1
1,953,151	-	sprT	MCAODC_09810	0.23	-2.6
1,953,151	-	sprT	MCAODC_09810	0.23	-0.5
1,953,159	-	sprT	MCAODC_09810	0.25	+0.6
1,953,289	+	sprT	MCAODC_09810	0.53	+1.5
1,953,317	-	sprT	MCAODC_09810	0.59	+0.5
1,953,380	+	sprT	MCAODC_09810	0.73	-2.8
1,953,425	+	sprT	MCAODC_09810	0.83	-1.0
1,953,425	+	sprT	MCAODC_09810	0.83	+1.2
1,953,426	-	sprT	MCAODC_09810	0.83	+0.4
1,953,426	-	sprT	MCAODC_09810	0.83	-0.7
1,953,450	+	sprT	MCAODC_09810	0.89	-2.2
1,953,450	+	sprT	MCAODC_09810	0.89	+0.8
1,953,450	+	sprT	MCAODC_09810	0.89	+0.1
1,953,556	+				+0.2
1,953,557	-				+0.3
1,953,649	+				+0.2
1,953,650	-				+0.9
1,953,667	+				-0.3
1,953,668	-				+0.7
1,953,668	-				-0.2
1,953,676	+				+0.8
1,953,676	+				+0.7
1,953,677	-				+0.5
1,953,677	-				-1.6
1,953,731	-				+1.2
1,953,766	+	galP	MCAODC_09815	0.10	-4.8
1,953,766	+	galP	MCAODC_09815	0.10	-3.0
1,953,766	+	galP	MCAODC_09815	0.10	+0.5
1,953,767	-	galP	MCAODC_09815	0.11	+0.7
1,953,767	-	galP	MCAODC_09815	0.11	+1.2
1,953,767	-	galP	MCAODC_09815	0.11	-1.5
1,953,767	-	galP	MCAODC_09815	0.11	+0.8
1,953,767	-	galP	MCAODC_09815	0.11	-2.8
1,953,770	-	galP	MCAODC_09815	0.11	+0.4
1,953,940	+	galP	MCAODC_09815	0.23	+2.3
1,953,940	+	galP	MCAODC_09815	0.23	+1.6
1,953,941	-	galP	MCAODC_09815	0.23	+1.0
1,953,941	-	galP	MCAODC_09815	0.23	+1.1
1,953,941	-	galP	MCAODC_09815	0.23	-2.6
1,953,941	-	galP	MCAODC_09815	0.23	+1.8
1,953,941	-	galP	MCAODC_09815	0.23	+0.1