Strain Fitness in Escherichia coli ECRC101 around MCAODC_09570

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,904,979	+	yghU	MCAODC_09565	0.18	-3.3
1,904,980	-	yghU	MCAODC_09565	0.18	+0.5
1,904,980	-	yghU	MCAODC_09565	0.18	-2.9
1,904,980	-	yghU	MCAODC_09565	0.18	+1.1
1,904,982	-	yghU	MCAODC_09565	0.19	+0.1
1,904,982	-	yghU	MCAODC_09565	0.19	-0.9
1,905,014	+	yghU	MCAODC_09565	0.22	+0.4
1,905,014	+	yghU	MCAODC_09565	0.22	+0.3
1,905,015	-	yghU	MCAODC_09565	0.22	+0.5
1,905,015	-	yghU	MCAODC_09565	0.22	-0.6
1,905,015	-	yghU	MCAODC_09565	0.22	+1.8
1,905,074	+	yghU	MCAODC_09565	0.29	-2.1
1,905,074	+	yghU	MCAODC_09565	0.29	+1.2
1,905,074	+	yghU	MCAODC_09565	0.29	-1.8
1,905,074	+	yghU	MCAODC_09565	0.29	-0.9
1,905,074	+	yghU	MCAODC_09565	0.29	-0.5
1,905,075	-	yghU	MCAODC_09565	0.29	+1.6
1,905,075	-	yghU	MCAODC_09565	0.29	-0.3
1,905,096	+	yghU	MCAODC_09565	0.32	+0.4
1,905,096	+	yghU	MCAODC_09565	0.32	-1.0
1,905,096	+	yghU	MCAODC_09565	0.32	-1.0
1,905,096	+	yghU	MCAODC_09565	0.32	-1.0
1,905,097	-	yghU	MCAODC_09565	0.32	+1.2
1,905,097	-	yghU	MCAODC_09565	0.32	-0.0
1,905,150	+	yghU	MCAODC_09565	0.38	-0.0
1,905,194	+	yghU	MCAODC_09565	0.43	-0.8
1,905,297	-	yghU	MCAODC_09565	0.55	+1.5
1,905,318	-	yghU	MCAODC_09565	0.57	-0.9
1,905,360	+	yghU	MCAODC_09565	0.62	-1.1
1,905,366	+	yghU	MCAODC_09565	0.63	+1.0
1,905,448	+	yghU	MCAODC_09565	0.72	+1.2
1,905,464	+	yghU	MCAODC_09565	0.74	+0.9
1,905,464	+	yghU	MCAODC_09565	0.74	+2.1
1,905,465	-	yghU	MCAODC_09565	0.74	+0.7
1,905,507	+	yghU	MCAODC_09565	0.79	-1.8
1,905,514	+	yghU	MCAODC_09565	0.80	-0.2
1,905,514	+	yghU	MCAODC_09565	0.80	+1.5
1,905,554	-	yghU	MCAODC_09565	0.85	+3.5
1,905,554	-	yghU	MCAODC_09565	0.85	+1.7
1,905,616	-				-0.8
1,905,671	+				+0.7
1,905,671	+				+1.0
1,905,672	-				-3.5
1,905,672	-				+0.8
1,905,672	-				-0.2
1,905,672	-				-0.4
1,905,675	+				+0.8
1,905,675	+				+1.0
1,905,675	+				-0.1
1,905,675	+				-0.3
1,905,675	+				-0.0
1,905,675	+				-2.1
1,905,676	-				+1.0
1,905,687	+				+0.7
1,905,687	+				-0.7
1,905,687	+				-1.5
1,905,725	+				+1.3
1,905,725	+				-0.6
1,905,726	-				+1.0
1,905,792	+				-2.4
1,905,792	+				+0.1
1,905,792	+				-3.5
1,905,792	+				-1.8
1,905,792	+				+0.1
1,905,793	-				-0.4
1,905,793	-				-0.2
1,905,793	-				-0.3
1,905,793	-				-0.3
1,905,793	-				-1.0
1,905,793	-				+1.4
1,905,793	-				+0.6
1,905,798	+				+0.7
1,905,799	-				-0.3
1,905,854	-				+0.1
1,905,866	+				+1.0
1,905,866	+				+0.4
1,905,867	-				-0.0
1,905,873	+				-4.2
1,905,873	+				-0.1
1,905,873	+				+0.4
1,905,873	+				-0.2
1,905,873	+				-0.0
1,905,874	-				-1.3
1,905,874	-				-0.0
1,905,879	+				+1.2
1,905,944	-				-1.4
1,905,967	+				+1.5
1,905,968	-				+0.4
1,905,968	-				+0.3
1,905,980	-				-2.4
1,906,030	+				+0.4
1,906,030	+				+0.3
1,906,030	-				-1.2
1,906,031	-				-1.6
1,906,031	-				+0.5
1,906,031	-				-1.7
1,906,031	-				+1.7
1,906,031	-				-0.3
1,906,045	+				-0.4
1,906,046	-				+1.9
1,906,046	-				+0.5
1,906,046	-				-2.4
1,906,046	-				-0.1
1,906,048	-				+1.8
1,906,103	-	gss	MCAODC_09570	0.11	+0.6
1,906,103	-	gss	MCAODC_09570	0.11	+1.0
1,906,245	+	gss	MCAODC_09570	0.19	-0.9
1,906,245	+	gss	MCAODC_09570	0.19	+1.5
1,906,245	+	gss	MCAODC_09570	0.19	+0.9
1,906,246	-	gss	MCAODC_09570	0.19	-3.4
1,906,269	+	gss	MCAODC_09570	0.20	-0.2
1,906,269	+	gss	MCAODC_09570	0.20	+0.3
1,906,296	+	gss	MCAODC_09570	0.22	-0.2
1,906,304	+	gss	MCAODC_09570	0.22	-2.9
1,906,304	+	gss	MCAODC_09570	0.22	-0.5
1,906,304	+	gss	MCAODC_09570	0.22	+0.8
1,906,304	+	gss	MCAODC_09570	0.22	+0.0
1,906,305	-	gss	MCAODC_09570	0.22	-2.6
1,906,323	+	gss	MCAODC_09570	0.23	-3.7
1,906,411	+	gss	MCAODC_09570	0.28	+1.1
1,906,412	-	gss	MCAODC_09570	0.28	+0.2
1,906,412	-	gss	MCAODC_09570	0.28	+0.5
1,906,412	-	gss	MCAODC_09570	0.28	+1.4
1,906,412	-	gss	MCAODC_09570	0.28	+0.7
1,906,412	-	gss	MCAODC_09570	0.28	-0.7
1,906,412	-	gss	MCAODC_09570	0.28	-2.6
1,906,413	+	gss	MCAODC_09570	0.28	+0.0
1,906,414	-	gss	MCAODC_09570	0.28	+0.8
1,906,480	+	gss	MCAODC_09570	0.32	+0.2
1,906,481	-	gss	MCAODC_09570	0.32	+0.9
1,906,481	-	gss	MCAODC_09570	0.32	-2.1
1,906,600	+	gss	MCAODC_09570	0.38	+0.8
1,906,600	+	gss	MCAODC_09570	0.38	-2.2
1,906,600	+	gss	MCAODC_09570	0.38	+0.5
1,906,600	+	gss	MCAODC_09570	0.38	+0.2
1,906,601	-	gss	MCAODC_09570	0.38	+0.1
1,906,645	+	gss	MCAODC_09570	0.40	-3.1
1,906,645	+	gss	MCAODC_09570	0.40	+2.3
1,906,645	+	gss	MCAODC_09570	0.40	+1.8
1,906,645	+	gss	MCAODC_09570	0.40	+0.0
1,906,646	-	gss	MCAODC_09570	0.41	-2.9
1,906,648	+	gss	MCAODC_09570	0.41	-1.1
1,906,648	+	gss	MCAODC_09570	0.41	+0.3
1,906,648	+	gss	MCAODC_09570	0.41	-1.4
1,906,684	-	gss	MCAODC_09570	0.43	-4.0
1,906,684	-	gss	MCAODC_09570	0.43	+0.0
1,906,711	+	gss	MCAODC_09570	0.44	-2.5
1,906,712	-	gss	MCAODC_09570	0.44	-0.2
1,906,712	-	gss	MCAODC_09570	0.44	-3.6
1,906,824	+	gss	MCAODC_09570	0.50	-3.4
1,906,824	+	gss	MCAODC_09570	0.50	+0.2
1,906,824	+	gss	MCAODC_09570	0.50	+0.3
1,906,824	+	gss	MCAODC_09570	0.50	+1.0
1,906,825	-	gss	MCAODC_09570	0.50	+1.3
1,906,825	-	gss	MCAODC_09570	0.50	-0.4
1,906,825	-	gss	MCAODC_09570	0.50	-1.5
1,906,825	-	gss	MCAODC_09570	0.50	+2.7
1,906,825	-	gss	MCAODC_09570	0.50	+1.1
1,906,877	-	gss	MCAODC_09570	0.53	+0.8
1,906,883	-	gss	MCAODC_09570	0.53	+0.4
1,906,908	+	gss	MCAODC_09570	0.55	-1.3
1,906,953	+	gss	MCAODC_09570	0.57	+0.6
1,907,086	-	gss	MCAODC_09570	0.64	-0.2
1,907,086	-	gss	MCAODC_09570	0.64	-1.5
1,907,125	-	gss	MCAODC_09570	0.66	+0.6
1,907,317	-	gss	MCAODC_09570	0.77	+1.4
1,907,324	+	gss	MCAODC_09570	0.77	+2.0
1,907,325	-	gss	MCAODC_09570	0.77	-2.4
1,907,428	+	gss	MCAODC_09570	0.83	-0.0
1,907,455	-	gss	MCAODC_09570	0.84	-3.0
1,907,455	-	gss	MCAODC_09570	0.84	-4.3
1,907,625	+				+2.0
1,907,626	-				-0.1
1,907,629	+				+0.9
1,907,629	+				-3.7
1,907,639	+				-0.1
1,907,639	+				+0.7
1,907,640	-				+0.9
1,907,643	+				+1.1
1,907,644	-				+1.3
1,907,644	-				+1.4
1,907,644	-				-0.7
1,907,665	+				+0.6
1,907,703	+				+1.0
1,907,749	+				+0.6
1,907,752	+				-1.1
1,907,753	-				-1.5
1,907,762	-				+2.2
1,907,762	-				-1.7
1,907,762	-				-1.0
1,907,789	-				+0.0
1,907,789	-				+1.3
1,907,825	-				+1.7
1,907,826	+				-0.0
1,907,827	-				+0.5
1,907,827	-				+1.2
1,907,860	-				-0.5
1,908,001	+				+1.3
1,908,032	+				-0.1
1,908,041	-				-3.2
1,908,047	+				-1.6
1,908,069	+				-3.8
1,908,069	+				+2.4
1,908,070	-				+1.3
1,908,071	+				-0.1
1,908,072	-				-0.4
1,908,172	+				+1.9
1,908,173	-				-2.1
1,908,240	-	pitA	MCAODC_09575	0.15	-3.5
1,908,252	+	pitA	MCAODC_09575	0.16	-0.3
1,908,253	-	pitA	MCAODC_09575	0.16	-3.1
1,908,276	+	pitA	MCAODC_09575	0.18	-0.1
1,908,276	+	pitA	MCAODC_09575	0.18	-1.9
1,908,277	-	pitA	MCAODC_09575	0.18	-2.5
1,908,277	-	pitA	MCAODC_09575	0.18	-2.6
1,908,277	-	pitA	MCAODC_09575	0.18	-0.8
1,908,358	-	pitA	MCAODC_09575	0.24	+0.5
1,908,427	-	pitA	MCAODC_09575	0.29	-2.8
1,908,609	+	pitA	MCAODC_09575	0.43	-3.3
1,908,609	+	pitA	MCAODC_09575	0.43	+0.2
1,908,609	+	pitA	MCAODC_09575	0.43	-0.7
1,908,610	-	pitA	MCAODC_09575	0.43	-1.6
1,908,655	-	pitA	MCAODC_09575	0.46	+0.9
1,908,676	-	pitA	MCAODC_09575	0.48	-0.1