Strain Fitness in Escherichia coli ECRC101 around MCAODC_09180

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaG and rpsU are separated by 110 nucleotidesrpsU and tsaD are separated by 237 nucleotides MCAODC_09175: dnaG - DNA primase, at 1,832,383 to 1,834,128 dnaG MCAODC_09180: rpsU - 30S ribosomal protein S21, at 1,834,239 to 1,834,454 rpsU MCAODC_09185: tsaD - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,834,692 to 1,835,705 tsaD Position (kb) 1834 1835Strain fitness (log2 ratio) -3 -2 -1 0 1at 1834.195 kb on - strandat 1834.584 kb on + strandat 1834.585 kb on - strandat 1834.585 kb on - strandat 1834.585 kb on - strandat 1834.599 kb on + strandat 1834.599 kb on + strandat 1834.600 kb on - strandat 1834.600 kb on - strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.601 kb on + strandat 1834.602 kb on - strandat 1834.602 kb on - strandat 1834.602 kb on - strandat 1834.602 kb on - strandat 1834.602 kb on - strandat 1834.602 kb on - strandat 1834.635 kb on + strandat 1834.635 kb on + strandat 1834.656 kb on + strandat 1834.656 kb on + strandat 1834.681 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,834,195 - -3.4
1,834,584 + -1.3
1,834,585 - -1.1
1,834,585 - +1.5
1,834,585 - +1.6
1,834,599 + +0.1
1,834,599 + -1.8
1,834,600 - -0.4
1,834,600 - +0.0
1,834,601 + +0.0
1,834,601 + +1.4
1,834,601 + +0.5
1,834,601 + -2.1
1,834,601 + -2.5
1,834,601 + -0.4
1,834,601 + +0.1
1,834,602 - -2.8
1,834,602 - +1.3
1,834,602 - -0.2
1,834,602 - -2.2
1,834,602 - -0.5
1,834,602 - -0.5
1,834,635 + +1.1
1,834,635 + +1.0
1,834,656 + -2.5
1,834,656 + -2.0
1,834,681 + -2.8

Or see this region's nucleotide sequence