Strain Fitness in Escherichia coli ECRC101 around MCAODC_09075

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,808,296	-	ygjQ	MCAODC_09065	0.57	-0.5
1,808,345	+	ygjQ	MCAODC_09065	0.64	+1.2
1,808,346	-	ygjQ	MCAODC_09065	0.64	+1.3
1,808,346	-	ygjQ	MCAODC_09065	0.64	-2.0
1,808,367	+	ygjQ	MCAODC_09065	0.67	-3.2
1,808,367	+	ygjQ	MCAODC_09065	0.67	+0.1
1,808,368	-	ygjQ	MCAODC_09065	0.67	+0.1
1,808,368	-	ygjQ	MCAODC_09065	0.67	+0.7
1,808,368	-	ygjQ	MCAODC_09065	0.67	+0.9
1,808,381	+	ygjQ	MCAODC_09065	0.69	+0.1
1,808,382	-	ygjQ	MCAODC_09065	0.69	+0.3
1,808,410	+	ygjQ	MCAODC_09065	0.73	+1.1
1,808,410	+	ygjQ	MCAODC_09065	0.73	+0.1
1,808,411	-	ygjQ	MCAODC_09065	0.73	-0.2
1,808,479	+	ygjQ	MCAODC_09065	0.83	+0.2
1,808,518	+	ygjQ	MCAODC_09065	0.89	+0.8
1,808,518	+	ygjQ	MCAODC_09065	0.89	-1.1
1,808,519	-	ygjQ	MCAODC_09065	0.89	+0.5
1,808,519	-	ygjQ	MCAODC_09065	0.89	+0.1
1,808,524	+	ygjQ	MCAODC_09065	0.90	+0.9
1,808,524	+	ygjQ	MCAODC_09065	0.90	+1.0
1,808,525	-	ygjQ	MCAODC_09065	0.90	-3.2
1,808,525	-	ygjQ	MCAODC_09065	0.90	+0.5
1,808,539	+				-1.5
1,808,540	-				+0.6
1,808,562	+				-0.1
1,808,563	-				+0.2
1,808,563	-				+0.1
1,808,563	-				-3.9
1,808,609	-				+0.4
1,808,739	+	ygjP	MCAODC_09070	0.13	+1.5
1,808,752	+	ygjP	MCAODC_09070	0.16	+0.6
1,808,752	+	ygjP	MCAODC_09070	0.16	+1.4
1,808,752	+	ygjP	MCAODC_09070	0.16	+0.8
1,808,753	-	ygjP	MCAODC_09070	0.16	+0.7
1,808,769	+	ygjP	MCAODC_09070	0.19	-0.2
1,808,782	+	ygjP	MCAODC_09070	0.22	-0.9
1,808,782	+	ygjP	MCAODC_09070	0.22	-0.4
1,808,783	-	ygjP	MCAODC_09070	0.22	-0.2
1,808,783	-	ygjP	MCAODC_09070	0.22	-1.3
1,808,923	+	ygjP	MCAODC_09070	0.50	+0.3
1,808,923	+	ygjP	MCAODC_09070	0.50	+1.2
1,808,923	+	ygjP	MCAODC_09070	0.50	+0.6
1,808,924	-	ygjP	MCAODC_09070	0.50	-2.4
1,808,924	-	ygjP	MCAODC_09070	0.50	+0.9
1,808,924	-	ygjP	MCAODC_09070	0.50	-1.4
1,808,928	-	ygjP	MCAODC_09070	0.51	-2.0
1,808,960	-	ygjP	MCAODC_09070	0.57	+0.9
1,808,960	-	ygjP	MCAODC_09070	0.57	-0.0
1,808,960	-	ygjP	MCAODC_09070	0.57	-0.8
1,808,960	-	ygjP	MCAODC_09070	0.57	+0.0
1,808,960	-	ygjP	MCAODC_09070	0.57	-0.9
1,808,967	+	ygjP	MCAODC_09070	0.59	+0.2
1,808,967	+	ygjP	MCAODC_09070	0.59	-2.0
1,808,967	+	ygjP	MCAODC_09070	0.59	-3.9
1,808,967	+	ygjP	MCAODC_09070	0.59	-0.4
1,808,968	-	ygjP	MCAODC_09070	0.59	+0.9
1,809,026	-	ygjP	MCAODC_09070	0.70	+1.3
1,809,027	+	ygjP	MCAODC_09070	0.70	+0.0
1,809,027	+	ygjP	MCAODC_09070	0.70	+0.9
1,809,028	-	ygjP	MCAODC_09070	0.71	+2.2
1,809,055	-	ygjP	MCAODC_09070	0.76	-3.9
1,809,134	+				+0.1
1,809,163	+				-0.7
1,809,163	+				-0.6
1,809,164	-				+0.3
1,809,164	-				+2.3
1,809,164	-				-2.4
1,809,164	-				+1.2
1,809,164	-				+0.3
1,809,164	-				+0.7
1,809,205	+				-0.4
1,809,270	+				-0.3
1,809,271	-				+0.4
1,809,297	+				-1.8
1,809,297	+				+0.6
1,809,297	+				-2.7
1,809,298	-				-0.3
1,809,298	-				-0.5
1,809,298	-				-2.0
1,809,432	+	rlmG	MCAODC_09075	0.15	+0.2
1,809,454	+	rlmG	MCAODC_09075	0.17	-0.2
1,809,455	-	rlmG	MCAODC_09075	0.17	-4.0
1,809,461	+	rlmG	MCAODC_09075	0.18	+0.3
1,809,479	+	rlmG	MCAODC_09075	0.19	-0.9
1,809,480	-	rlmG	MCAODC_09075	0.19	+0.1
1,809,480	-	rlmG	MCAODC_09075	0.19	+1.5
1,809,511	-	rlmG	MCAODC_09075	0.22	+1.1
1,809,670	+	rlmG	MCAODC_09075	0.36	+1.1
1,809,670	+	rlmG	MCAODC_09075	0.36	+0.5
1,809,670	+	rlmG	MCAODC_09075	0.36	+0.5
1,809,670	+	rlmG	MCAODC_09075	0.36	+0.5
1,809,671	-	rlmG	MCAODC_09075	0.36	-0.3
1,809,671	-	rlmG	MCAODC_09075	0.36	+1.0
1,809,671	-	rlmG	MCAODC_09075	0.36	-0.7
1,809,673	+	rlmG	MCAODC_09075	0.36	+1.8
1,809,673	+	rlmG	MCAODC_09075	0.36	-0.2
1,809,674	-	rlmG	MCAODC_09075	0.36	+0.1
1,809,781	+	rlmG	MCAODC_09075	0.46	-0.2
1,809,781	+	rlmG	MCAODC_09075	0.46	-0.4
1,809,919	+	rlmG	MCAODC_09075	0.58	-2.7
1,810,115	-	rlmG	MCAODC_09075	0.75	+0.9
1,810,156	+	rlmG	MCAODC_09075	0.79	-0.5
1,810,268	+	rlmG	MCAODC_09075	0.89	-1.9
1,810,268	+	rlmG	MCAODC_09075	0.89	-0.5
1,810,268	+	rlmG	MCAODC_09075	0.89	+0.5
1,810,269	-	rlmG	MCAODC_09075	0.89	+1.4
1,810,269	-	rlmG	MCAODC_09075	0.89	-2.8
1,810,269	-	rlmG	MCAODC_09075	0.89	+1.3
1,810,269	-	rlmG	MCAODC_09075	0.89	-2.1
1,810,269	-	rlmG	MCAODC_09075	0.89	+0.3
1,810,270	+	rlmG	MCAODC_09075	0.89	-3.9
1,810,271	-	rlmG	MCAODC_09075	0.89	-3.4
1,810,295	+				-0.0
1,810,352	-				+1.5
1,810,408	-				-0.3
1,810,408	-				+1.3
1,810,443	+				-0.9
1,810,444	-				+1.2
1,810,531	-				+1.8
1,810,531	-				-0.3
1,810,559	+				+0.0
1,810,559	+				-1.7
1,810,559	+				+0.5
1,810,560	-				+0.3
1,810,574	-				-2.7
1,810,574	-				+0.7
1,810,584	-				+0.2
1,810,584	-				-3.4
1,810,649	-				+0.1
1,810,736	+	higB	MCAODC_09080	0.18	-0.1
1,810,736	+	higB	MCAODC_09080	0.18	-0.5
1,810,737	-	higB	MCAODC_09080	0.18	+0.3
1,810,737	-	higB	MCAODC_09080	0.18	+1.7
1,810,737	-	higB	MCAODC_09080	0.18	-0.2
1,810,779	+	higB	MCAODC_09080	0.31	-2.2
1,810,779	+	higB	MCAODC_09080	0.31	-0.3
1,810,780	-	higB	MCAODC_09080	0.32	-2.2
1,810,802	-	higB	MCAODC_09080	0.39	+0.4
1,810,810	+	higB	MCAODC_09080	0.41	+1.1
1,810,810	+	higB	MCAODC_09080	0.41	+0.9
1,810,836	+	higB	MCAODC_09080	0.50	-0.5
1,810,851	+	higB	MCAODC_09080	0.54	+0.1
1,810,879	+	higB	MCAODC_09080	0.63	+0.1
1,810,879	+	higB	MCAODC_09080	0.63	-0.3
1,810,879	+	higB	MCAODC_09080	0.63	-2.4
1,810,880	-	higB	MCAODC_09080	0.63	-0.8
1,810,880	-	higB	MCAODC_09080	0.63	-0.2
1,810,888	+	higB	MCAODC_09080	0.66	-1.9
1,810,888	+	higB	MCAODC_09080	0.66	+0.6
1,810,889	-	higB	MCAODC_09080	0.66	-1.9
1,810,889	-	higB	MCAODC_09080	0.66	+2.0
1,810,889	-	higB	MCAODC_09080	0.66	-0.7
1,810,920	+	higB	MCAODC_09080	0.76	+1.5
1,810,920	+	higB	MCAODC_09080	0.76	+2.0
1,810,921	-	higB	MCAODC_09080	0.77	-0.8
1,810,924	+	higB	MCAODC_09080	0.77	+0.8
1,810,924	+	higB	MCAODC_09080	0.77	-0.7
1,810,924	+	higB	MCAODC_09080	0.77	+0.5
1,810,924	+	higB	MCAODC_09080	0.77	-1.3
1,810,924	+	higB	MCAODC_09080	0.77	+0.9
1,810,924	+	higB	MCAODC_09080	0.77	-2.7
1,810,924	+	higB	MCAODC_09080	0.77	+2.9
1,810,924	+	higB	MCAODC_09080	0.77	-1.9
1,810,924	+	higB	MCAODC_09080	0.77	+0.4
1,810,924	+	higB	MCAODC_09080	0.77	+0.8
1,810,925	-	higB	MCAODC_09080	0.78	+0.3
1,810,925	-	higB	MCAODC_09080	0.78	+0.3
1,810,925	-	higB	MCAODC_09080	0.78	+0.8
1,810,925	-	higB	MCAODC_09080	0.78	-2.3
1,810,925	-	higB	MCAODC_09080	0.78	-0.9
1,810,925	-	higB	MCAODC_09080	0.78	-1.3
1,810,925	-	higB	MCAODC_09080	0.78	+0.5
1,810,935	-	higB	MCAODC_09080	0.81	-2.0
1,810,935	-	higB	MCAODC_09080	0.81	-4.6
1,810,935	-	higB	MCAODC_09080	0.81	+0.3
1,810,943	+	higB	MCAODC_09080	0.83	-0.4
1,810,944	-	higB	MCAODC_09080	0.84	+2.3
1,810,976	+				-0.1
1,811,268	+	higA	MCAODC_09085	0.66	-2.9
1,811,305	+	higA	MCAODC_09085	0.75	-3.8