Strain Fitness in Escherichia coli ECRC101 around MCAODC_05640

Experiment: Casamino-acids

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Casamino-acids
1,139,219	-	yidI	MCAODC_05625	0.86	-2.0
1,139,219	-	yidI	MCAODC_05625	0.86	-0.8
1,139,236	+				+0.6
1,139,236	+				+1.6
1,139,237	-				-0.3
1,139,237	-				-0.0
1,139,237	-				-0.1
1,139,237	-				+2.2
1,139,237	-				+0.7
1,139,237	-				-0.2
1,139,269	+				+0.2
1,139,270	-				+1.2
1,139,293	+				+1.3
1,139,294	-				-2.5
1,139,311	+				+0.0
1,139,311	+				+1.5
1,139,311	+				+0.2
1,139,357	+				+1.8
1,139,358	-				+0.8
1,139,358	-				+0.3
1,139,422	+				-0.5
1,139,440	-	yidH	MCAODC_05630	0.15	-3.6
1,139,449	-	yidH	MCAODC_05630	0.17	-2.0
1,139,449	-	yidH	MCAODC_05630	0.17	+0.8
1,139,449	-	yidH	MCAODC_05630	0.17	-0.3
1,139,469	+	yidH	MCAODC_05630	0.23	+0.4
1,139,477	+	yidH	MCAODC_05630	0.25	+1.7
1,139,593	+	yidH	MCAODC_05630	0.59	+0.2
1,139,593	+	yidH	MCAODC_05630	0.59	-0.5
1,139,593	+	yidH	MCAODC_05630	0.59	+1.0
1,139,593	+	yidH	MCAODC_05630	0.59	+0.4
1,139,593	+	yidH	MCAODC_05630	0.59	-0.4
1,139,593	+	yidH	MCAODC_05630	0.59	-3.4
1,139,593	+	yidH	MCAODC_05630	0.59	+0.6
1,139,593	+	yidH	MCAODC_05630	0.59	+0.9
1,139,594	-	yidH	MCAODC_05630	0.59	+1.3
1,139,594	-	yidH	MCAODC_05630	0.59	-3.4
1,139,594	-	yidH	MCAODC_05630	0.59	+0.6
1,139,594	-	yidH	MCAODC_05630	0.59	-0.3
1,139,599	+	yidH	MCAODC_05630	0.60	-0.7
1,139,599	+	yidH	MCAODC_05630	0.60	-0.2
1,139,600	-	yidH	MCAODC_05630	0.61	+1.0
1,139,667	-	yidH	MCAODC_05630	0.80	+0.6
1,139,681	+	yidH	MCAODC_05630	0.84	-2.1
1,139,684	+	yidH	MCAODC_05630	0.85	+2.1
1,139,685	-	yidH	MCAODC_05630	0.85	+1.0
1,139,685	-	yidH	MCAODC_05630	0.85	+0.1
1,139,696	+	yidH	MCAODC_05630	0.88	+2.0
1,139,725	+				+0.2
1,139,725	+				+0.6
1,139,725	+				-1.0
1,139,725	+				+0.1
1,139,726	-				-0.0
1,139,726	-				-1.6
1,139,726	-				-2.0
1,139,726	-				-1.7
1,139,726	-				-0.2
1,139,726	-				-1.2
1,139,782	+	yidG	MCAODC_05635	0.15	+0.7
1,139,782	+	yidG	MCAODC_05635	0.15	-0.5
1,139,783	-	yidG	MCAODC_05635	0.16	+0.7
1,139,783	-	yidG	MCAODC_05635	0.16	+0.2
1,139,783	-	yidG	MCAODC_05635	0.16	-1.4
1,139,783	-	yidG	MCAODC_05635	0.16	-0.8
1,139,871	+	yidG	MCAODC_05635	0.40	+1.4
1,139,872	-	yidG	MCAODC_05635	0.40	-1.7
1,139,924	+	yidG	MCAODC_05635	0.55	+0.7
1,139,924	+	yidG	MCAODC_05635	0.55	+1.5
1,139,924	+	yidG	MCAODC_05635	0.55	-0.4
1,139,925	-	yidG	MCAODC_05635	0.55	-1.0
1,139,925	-	yidG	MCAODC_05635	0.55	+0.6
1,139,933	-	yidG	MCAODC_05635	0.57	-1.6
1,139,933	-	yidG	MCAODC_05635	0.57	-0.3
1,139,943	+	yidG	MCAODC_05635	0.60	+1.5
1,139,983	-	yidG	MCAODC_05635	0.71	+0.9
1,140,018	+	yidG	MCAODC_05635	0.80	-0.5
1,140,019	-	yidG	MCAODC_05635	0.81	-2.4
1,140,030	+	yidG	MCAODC_05635	0.84	+1.3
1,140,031	-	yidG	MCAODC_05635	0.84	-0.5
1,140,031	-	yidG	MCAODC_05635	0.84	+1.0
1,140,042	+	yidG	MCAODC_05635	0.87	+0.4
1,140,043	-	yidG	MCAODC_05635	0.87	-1.8
1,140,050	-	yidG	MCAODC_05635	0.89	-2.3
1,140,050	-	yidG	MCAODC_05635	0.89	+0.4
1,140,050	-	yidG	MCAODC_05635	0.89	+0.9
1,140,050	-	yidG	MCAODC_05635	0.89	-3.0
1,140,051	+	yidG	MCAODC_05635	0.90	-0.3
1,140,051	+	yidG	MCAODC_05635	0.90	+1.5
1,140,051	+	yidG	MCAODC_05635	0.90	+1.0
1,140,051	+	yidG	MCAODC_05635	0.90	+0.0
1,140,051	+	yidG	MCAODC_05635	0.90	+0.4
1,140,051	+	yidG	MCAODC_05635	0.90	-0.7
1,140,051	+	yidG	MCAODC_05635	0.90	-0.1
1,140,051	+	yidG	MCAODC_05635	0.90	-2.6
1,140,051	+	yidG	MCAODC_05635	0.90	+0.6
1,140,051	+	yidG	MCAODC_05635	0.90	+1.0
1,140,052	-				-0.5
1,140,052	-				+0.1
1,140,052	-				-0.6
1,140,052	-				+0.4
1,140,052	-				+0.7
1,140,052	-				+0.6
1,140,052	-				+1.5
1,140,052	-				+0.8
1,140,052	-				+1.1
1,140,062	-				+0.3
1,140,062	-				+0.7
1,140,062	-				-3.1
1,140,066	+				+0.7
1,140,066	+				-0.3
1,140,066	+				+0.2
1,140,067	-				-0.5
1,140,067	-				+1.1
1,140,126	+				+0.6
1,140,126	+				-0.2
1,140,126	+				-1.8
1,140,137	+		MCAODC_05640	0.10	+0.6
1,140,138	-		MCAODC_05640	0.11	-1.9
1,140,213	+		MCAODC_05640	0.26	+0.0
1,140,213	+		MCAODC_05640	0.26	+1.6
1,140,213	+		MCAODC_05640	0.26	+0.8
1,140,324	+		MCAODC_05640	0.48	+0.8
1,140,334	-		MCAODC_05640	0.50	+1.3
1,140,482	-		MCAODC_05640	0.80	+1.0
1,140,494	-		MCAODC_05640	0.82	-1.2
1,140,494	-		MCAODC_05640	0.82	+0.1
1,140,494	-		MCAODC_05640	0.82	-0.1
1,140,500	-		MCAODC_05640	0.83	-2.7
1,140,514	-		MCAODC_05640	0.86	-0.3
1,140,536	+				-0.2
1,140,917	+	emrD	MCAODC_05645	0.28	-1.2
1,140,917	+	emrD	MCAODC_05645	0.28	+0.2
1,140,917	+	emrD	MCAODC_05645	0.28	+0.4
1,140,917	+	emrD	MCAODC_05645	0.28	-1.2
1,140,918	-	emrD	MCAODC_05645	0.28	-3.4
1,140,940	+	emrD	MCAODC_05645	0.30	+0.3
1,140,973	+	emrD	MCAODC_05645	0.32	-1.1
1,140,974	-	emrD	MCAODC_05645	0.32	-0.1
1,140,977	-	emrD	MCAODC_05645	0.33	-0.4
1,141,027	+	emrD	MCAODC_05645	0.37	+1.5
1,141,036	+	emrD	MCAODC_05645	0.38	-0.5
1,141,037	-	emrD	MCAODC_05645	0.38	-0.2
1,141,048	+	emrD	MCAODC_05645	0.39	-0.7
1,141,049	-	emrD	MCAODC_05645	0.39	+0.8
1,141,140	+	emrD	MCAODC_05645	0.46	+0.4
1,141,147	+	emrD	MCAODC_05645	0.47	+0.5
1,141,174	+	emrD	MCAODC_05645	0.49	+1.4
1,141,174	+	emrD	MCAODC_05645	0.49	-0.2
1,141,175	-	emrD	MCAODC_05645	0.49	+0.3
1,141,175	-	emrD	MCAODC_05645	0.49	+1.0
1,141,176	+	emrD	MCAODC_05645	0.49	-2.3
1,141,241	-	emrD	MCAODC_05645	0.55	+1.1
1,141,265	+	emrD	MCAODC_05645	0.57	+1.1
1,141,265	+	emrD	MCAODC_05645	0.57	+0.6
1,141,265	+	emrD	MCAODC_05645	0.57	+0.5
1,141,266	-	emrD	MCAODC_05645	0.57	+0.1
1,141,266	-	emrD	MCAODC_05645	0.57	+0.1
1,141,281	+	emrD	MCAODC_05645	0.58	-1.2
1,141,282	-	emrD	MCAODC_05645	0.58	+1.6
1,141,430	+	emrD	MCAODC_05645	0.71	-3.0
1,141,481	+	emrD	MCAODC_05645	0.75	-0.7
1,141,481	+	emrD	MCAODC_05645	0.75	-0.2
1,141,481	+	emrD	MCAODC_05645	0.75	+0.2