Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemE and nudC are separated by 39 nucleotides nudC and rsd are separated by 94 nucleotides rsd and thiC are separated by 232 nucleotides
MCAODC_03860: hemE - uroporphyrinogen decarboxylase, at 778,547 to 779,611
hemE
MCAODC_03865: nudC - NAD(+) diphosphatase, at 779,651 to 780,424
nudC
MCAODC_03870: rsd - sigma D regulator, at 780,519 to 780,995
rsd
MCAODC_03875: thiC - phosphomethylpyrimidine synthase ThiC, at 781,228 to 783,123
thiC
Position (kb) 779
780
781 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 779.626 kb on - strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.646 kb on + strand at 779.647 kb on - strand at 779.647 kb on - strand at 779.647 kb on - strand at 779.658 kb on + strand at 779.658 kb on + strand at 779.658 kb on + strand at 779.659 kb on - strand at 779.684 kb on - strand at 779.691 kb on - strand at 779.691 kb on - strand at 779.691 kb on - strand at 779.802 kb on + strand, within nudC at 779.802 kb on + strand, within nudC at 779.803 kb on - strand, within nudC at 779.803 kb on - strand, within nudC at 779.825 kb on + strand, within nudC at 779.862 kb on + strand, within nudC at 779.876 kb on - strand, within nudC at 779.958 kb on - strand, within nudC at 779.962 kb on + strand, within nudC at 779.962 kb on + strand, within nudC at 779.963 kb on - strand, within nudC at 780.032 kb on - strand, within nudC at 780.054 kb on + strand, within nudC at 780.054 kb on + strand, within nudC at 780.109 kb on - strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.135 kb on + strand, within nudC at 780.136 kb on - strand, within nudC at 780.136 kb on - strand, within nudC at 780.139 kb on + strand, within nudC at 780.168 kb on - strand, within nudC at 780.168 kb on - strand, within nudC at 780.168 kb on - strand, within nudC at 780.221 kb on + strand, within nudC at 780.222 kb on - strand, within nudC at 780.232 kb on + strand, within nudC at 780.233 kb on - strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.254 kb on + strand, within nudC at 780.255 kb on - strand, within nudC at 780.255 kb on - strand, within nudC at 780.255 kb on - strand, within nudC at 780.293 kb on + strand, within nudC at 780.293 kb on + strand, within nudC at 780.293 kb on + strand, within nudC at 780.363 kb on - strand at 780.413 kb on + strand at 780.414 kb on - strand at 780.424 kb on + strand at 780.424 kb on + strand at 780.424 kb on + strand at 780.425 kb on - strand at 780.425 kb on - strand at 780.425 kb on - strand at 780.436 kb on + strand at 780.437 kb on - strand at 780.498 kb on + strand at 780.499 kb on - strand at 780.524 kb on + strand at 780.524 kb on + strand at 780.536 kb on + strand at 780.563 kb on + strand at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.586 kb on + strand, within rsd at 780.587 kb on - strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.592 kb on + strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.593 kb on - strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.596 kb on + strand, within rsd at 780.597 kb on - strand, within rsd at 780.597 kb on - strand, within rsd at 780.597 kb on - strand, within rsd at 780.615 kb on + strand, within rsd at 780.616 kb on - strand, within rsd at 780.616 kb on - strand, within rsd at 780.618 kb on + strand, within rsd at 780.618 kb on + strand, within rsd at 780.618 kb on + strand, within rsd at 780.618 kb on + strand, within rsd at 780.618 kb on + strand, within rsd at 780.619 kb on - strand, within rsd at 780.619 kb on - strand, within rsd at 780.619 kb on - strand, within rsd at 780.635 kb on + strand, within rsd at 780.635 kb on + strand, within rsd at 780.636 kb on - strand, within rsd at 780.636 kb on - strand, within rsd at 780.654 kb on + strand, within rsd at 780.654 kb on + strand, within rsd at 780.654 kb on + strand, within rsd at 780.654 kb on + strand, within rsd at 780.654 kb on + strand, within rsd at 780.655 kb on - strand, within rsd at 780.655 kb on - strand, within rsd at 780.708 kb on + strand, within rsd at 780.708 kb on + strand, within rsd at 780.708 kb on + strand, within rsd at 780.709 kb on - strand, within rsd at 780.709 kb on - strand, within rsd at 780.709 kb on - strand, within rsd at 780.732 kb on - strand, within rsd at 780.735 kb on + strand, within rsd at 780.735 kb on + strand, within rsd at 780.752 kb on + strand, within rsd at 780.753 kb on - strand, within rsd at 780.753 kb on - strand, within rsd at 780.827 kb on + strand, within rsd at 780.835 kb on - strand, within rsd at 780.837 kb on + strand, within rsd at 780.838 kb on - strand, within rsd at 780.876 kb on + strand, within rsd at 780.877 kb on - strand, within rsd at 781.015 kb on + strand at 781.015 kb on + strand at 781.020 kb on + strand at 781.020 kb on + strand at 781.047 kb on - strand at 781.068 kb on - strand at 781.068 kb on - strand at 781.114 kb on + strand at 781.117 kb on + strand at 781.117 kb on + strand at 781.118 kb on - strand at 781.139 kb on + strand at 781.140 kb on - strand at 781.210 kb on - strand at 781.210 kb on - strand at 781.210 kb on - strand at 781.210 kb on - strand at 781.227 kb on + strand at 781.227 kb on + strand at 781.227 kb on + strand at 781.227 kb on + strand at 781.227 kb on + strand at 781.228 kb on - strand at 781.228 kb on - strand at 781.228 kb on - strand at 781.228 kb on - strand at 781.327 kb on + strand at 781.327 kb on + strand at 781.327 kb on + strand at 781.328 kb on - strand at 781.328 kb on - strand at 781.329 kb on + strand at 781.391 kb on + strand at 781.391 kb on + strand at 781.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 779,626 - +0.5 779,646 + -2.1 779,646 + -0.1 779,646 + -0.5 779,646 + -1.4 779,646 + -4.8 779,646 + +1.2 779,647 - +1.2 779,647 - -3.8 779,647 - -1.9 779,658 + -3.0 779,658 + -0.0 779,658 + +0.9 779,659 - +0.0 779,684 - -1.1 779,691 - +0.6 779,691 - +1.3 779,691 - -0.2 779,802 + nudC MCAODC_03865 0.20 +0.6 779,802 + nudC MCAODC_03865 0.20 +0.7 779,803 - nudC MCAODC_03865 0.20 -1.8 779,803 - nudC MCAODC_03865 0.20 -0.9 779,825 + nudC MCAODC_03865 0.22 -0.4 779,862 + nudC MCAODC_03865 0.27 +0.9 779,876 - nudC MCAODC_03865 0.29 -2.5 779,958 - nudC MCAODC_03865 0.40 +1.9 779,962 + nudC MCAODC_03865 0.40 +0.0 779,962 + nudC MCAODC_03865 0.40 +1.3 779,963 - nudC MCAODC_03865 0.40 +1.6 780,032 - nudC MCAODC_03865 0.49 -0.5 780,054 + nudC MCAODC_03865 0.52 -2.4 780,054 + nudC MCAODC_03865 0.52 +0.2 780,109 - nudC MCAODC_03865 0.59 -2.2 780,135 + nudC MCAODC_03865 0.63 -1.2 780,135 + nudC MCAODC_03865 0.63 -3.4 780,135 + nudC MCAODC_03865 0.63 -2.4 780,135 + nudC MCAODC_03865 0.63 -0.3 780,136 - nudC MCAODC_03865 0.63 -0.5 780,136 - nudC MCAODC_03865 0.63 -1.8 780,139 + nudC MCAODC_03865 0.63 +0.1 780,168 - nudC MCAODC_03865 0.67 +1.3 780,168 - nudC MCAODC_03865 0.67 +1.1 780,168 - nudC MCAODC_03865 0.67 -1.3 780,221 + nudC MCAODC_03865 0.74 -1.8 780,222 - nudC MCAODC_03865 0.74 -1.5 780,232 + nudC MCAODC_03865 0.75 -1.1 780,233 - nudC MCAODC_03865 0.75 -0.1 780,254 + nudC MCAODC_03865 0.78 +0.3 780,254 + nudC MCAODC_03865 0.78 +0.3 780,254 + nudC MCAODC_03865 0.78 +0.4 780,254 + nudC MCAODC_03865 0.78 +0.0 780,254 + nudC MCAODC_03865 0.78 -0.8 780,254 + nudC MCAODC_03865 0.78 +1.1 780,255 - nudC MCAODC_03865 0.78 -2.2 780,255 - nudC MCAODC_03865 0.78 +0.3 780,255 - nudC MCAODC_03865 0.78 +0.5 780,293 + nudC MCAODC_03865 0.83 +0.5 780,293 + nudC MCAODC_03865 0.83 +1.4 780,293 + nudC MCAODC_03865 0.83 -0.4 780,363 - +0.3 780,413 + +1.4 780,414 - -2.6 780,424 + -2.9 780,424 + -1.0 780,424 + +1.8 780,425 - +1.9 780,425 - +0.8 780,425 - -1.7 780,436 + -0.0 780,437 - +0.4 780,498 + +0.7 780,499 - +2.1 780,524 + -2.3 780,524 + +0.8 780,536 + -1.2 780,563 + +0.9 780,586 + rsd MCAODC_03870 0.14 -1.0 780,586 + rsd MCAODC_03870 0.14 -0.2 780,586 + rsd MCAODC_03870 0.14 -0.4 780,586 + rsd MCAODC_03870 0.14 +1.0 780,587 - rsd MCAODC_03870 0.14 +0.1 780,592 + rsd MCAODC_03870 0.15 +0.8 780,592 + rsd MCAODC_03870 0.15 +1.4 780,592 + rsd MCAODC_03870 0.15 +1.5 780,592 + rsd MCAODC_03870 0.15 +1.7 780,592 + rsd MCAODC_03870 0.15 +0.8 780,592 + rsd MCAODC_03870 0.15 +2.4 780,593 - rsd MCAODC_03870 0.16 +1.2 780,593 - rsd MCAODC_03870 0.16 -1.0 780,593 - rsd MCAODC_03870 0.16 -0.8 780,593 - rsd MCAODC_03870 0.16 +2.4 780,593 - rsd MCAODC_03870 0.16 +0.2 780,593 - rsd MCAODC_03870 0.16 +1.3 780,593 - rsd MCAODC_03870 0.16 -1.8 780,593 - rsd MCAODC_03870 0.16 +0.9 780,593 - rsd MCAODC_03870 0.16 +0.2 780,593 - rsd MCAODC_03870 0.16 +2.7 780,596 + rsd MCAODC_03870 0.16 +0.0 780,596 + rsd MCAODC_03870 0.16 -0.2 780,596 + rsd MCAODC_03870 0.16 +0.4 780,596 + rsd MCAODC_03870 0.16 -2.3 780,596 + rsd MCAODC_03870 0.16 +0.7 780,596 + rsd MCAODC_03870 0.16 +2.2 780,596 + rsd MCAODC_03870 0.16 +0.3 780,597 - rsd MCAODC_03870 0.16 +0.3 780,597 - rsd MCAODC_03870 0.16 -1.5 780,597 - rsd MCAODC_03870 0.16 +1.0 780,615 + rsd MCAODC_03870 0.20 -1.0 780,616 - rsd MCAODC_03870 0.20 -0.3 780,616 - rsd MCAODC_03870 0.20 -0.8 780,618 + rsd MCAODC_03870 0.21 +0.2 780,618 + rsd MCAODC_03870 0.21 -0.0 780,618 + rsd MCAODC_03870 0.21 -2.5 780,618 + rsd MCAODC_03870 0.21 +1.3 780,618 + rsd MCAODC_03870 0.21 +0.1 780,619 - rsd MCAODC_03870 0.21 -3.5 780,619 - rsd MCAODC_03870 0.21 +1.0 780,619 - rsd MCAODC_03870 0.21 +0.2 780,635 + rsd MCAODC_03870 0.24 -2.8 780,635 + rsd MCAODC_03870 0.24 -0.6 780,636 - rsd MCAODC_03870 0.25 +0.4 780,636 - rsd MCAODC_03870 0.25 -1.3 780,654 + rsd MCAODC_03870 0.28 +0.0 780,654 + rsd MCAODC_03870 0.28 -0.4 780,654 + rsd MCAODC_03870 0.28 +0.6 780,654 + rsd MCAODC_03870 0.28 +1.4 780,654 + rsd MCAODC_03870 0.28 +1.1 780,655 - rsd MCAODC_03870 0.29 +0.4 780,655 - rsd MCAODC_03870 0.29 -4.1 780,708 + rsd MCAODC_03870 0.40 +0.6 780,708 + rsd MCAODC_03870 0.40 +0.3 780,708 + rsd MCAODC_03870 0.40 -0.6 780,709 - rsd MCAODC_03870 0.40 +1.3 780,709 - rsd MCAODC_03870 0.40 +1.1 780,709 - rsd MCAODC_03870 0.40 +1.4 780,732 - rsd MCAODC_03870 0.45 -1.4 780,735 + rsd MCAODC_03870 0.45 -0.2 780,735 + rsd MCAODC_03870 0.45 -0.0 780,752 + rsd MCAODC_03870 0.49 +0.8 780,753 - rsd MCAODC_03870 0.49 -0.4 780,753 - rsd MCAODC_03870 0.49 +1.2 780,827 + rsd MCAODC_03870 0.65 +1.3 780,835 - rsd MCAODC_03870 0.66 +2.2 780,837 + rsd MCAODC_03870 0.67 +0.3 780,838 - rsd MCAODC_03870 0.67 +0.2 780,876 + rsd MCAODC_03870 0.75 +0.0 780,877 - rsd MCAODC_03870 0.75 +0.6 781,015 + +0.5 781,015 + -0.6 781,020 + +0.2 781,020 + -0.4 781,047 - -1.9 781,068 - -1.2 781,068 - -1.8 781,114 + -2.5 781,117 + -0.4 781,117 + -4.2 781,118 - -3.7 781,139 + -3.7 781,140 - -4.4 781,210 - -0.8 781,210 - -2.2 781,210 - -0.1 781,210 - -0.7 781,227 + -2.2 781,227 + -4.4 781,227 + -2.5 781,227 + -0.7 781,227 + +0.8 781,228 - -2.2 781,228 - -1.9 781,228 - +0.2 781,228 - -2.6 781,327 + -1.6 781,327 + -3.8 781,327 + -1.0 781,328 - -0.9 781,328 - -1.8 781,329 + -3.4 781,391 + -1.2 781,391 + -3.7 781,392 - +0.3
Or see this region's nucleotide sequence