Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zraR and zraS overlap by 4 nucleotides zraS and MCAODC_03830 are separated by 106 nucleotides MCAODC_03830 and zraP are separated by 2 nucleotides zraP and yjaH are separated by 1 nucleotides
MCAODC_03820: zraR - sigma-54-dependent response regulator transcription factor ZraR, at 772,703 to 774,028
zraR
MCAODC_03825: zraS - two-component system sensor histidine kinase ZraS, at 774,025 to 775,401
zraS
MCAODC_03830: MCAODC_03830 - zinc resistance-associated protein, at 775,508 to 775,636
_03830
MCAODC_03835: zraP - zinc resistance sensor/chaperone ZraP, at 775,639 to 776,064
zraP
MCAODC_03840: yjaH - Uncharacterized protein YjaH, at 776,066 to 776,701
yjaH
Position (kb) 774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 773.029 kb on + strand, within zraR at 773.030 kb on - strand, within zraR at 773.030 kb on - strand, within zraR at 773.075 kb on - strand, within zraR at 773.075 kb on - strand, within zraR at 773.102 kb on + strand, within zraR at 773.130 kb on + strand, within zraR at 773.134 kb on - strand, within zraR at 773.218 kb on + strand, within zraR at 773.650 kb on + strand, within zraR at 773.650 kb on + strand, within zraR at 773.651 kb on - strand, within zraR at 773.651 kb on - strand, within zraR at 773.660 kb on - strand, within zraR at 773.722 kb on - strand, within zraR at 773.772 kb on + strand, within zraR at 773.772 kb on + strand, within zraR at 773.772 kb on + strand, within zraR at 773.782 kb on + strand, within zraR at 773.782 kb on + strand, within zraR at 773.782 kb on + strand, within zraR at 773.783 kb on - strand, within zraR at 773.826 kb on - strand, within zraR at 773.826 kb on - strand, within zraR at 773.826 kb on - strand, within zraR at 773.940 kb on + strand at 773.940 kb on + strand at 773.941 kb on - strand at 773.972 kb on - strand at 773.972 kb on - strand at 773.972 kb on - strand at 774.008 kb on - strand at 774.013 kb on + strand at 774.014 kb on - strand at 774.017 kb on - strand at 774.017 kb on - strand at 774.043 kb on - strand at 774.048 kb on + strand at 774.051 kb on + strand at 774.052 kb on - strand at 774.052 kb on - strand at 774.114 kb on + strand at 774.114 kb on + strand at 774.114 kb on + strand at 774.115 kb on - strand at 774.115 kb on - strand at 774.135 kb on + strand at 774.135 kb on + strand at 774.135 kb on + strand at 774.135 kb on + strand at 774.135 kb on + strand at 774.136 kb on - strand at 774.138 kb on + strand at 774.138 kb on + strand at 774.138 kb on + strand at 774.138 kb on + strand at 774.139 kb on - strand at 774.139 kb on - strand at 774.139 kb on - strand at 774.139 kb on - strand at 774.188 kb on + strand, within zraS at 774.189 kb on - strand, within zraS at 774.288 kb on + strand, within zraS at 774.319 kb on - strand, within zraS at 774.319 kb on - strand, within zraS at 774.319 kb on - strand, within zraS at 774.439 kb on + strand, within zraS at 774.440 kb on - strand, within zraS at 774.449 kb on - strand, within zraS at 774.508 kb on - strand, within zraS at 774.727 kb on + strand, within zraS at 774.775 kb on + strand, within zraS at 774.776 kb on - strand, within zraS at 774.813 kb on + strand, within zraS at 774.856 kb on - strand, within zraS at 774.858 kb on + strand, within zraS at 774.858 kb on + strand, within zraS at 774.859 kb on - strand, within zraS at 774.913 kb on - strand, within zraS at 774.913 kb on - strand, within zraS at 775.030 kb on + strand, within zraS at 775.030 kb on + strand, within zraS at 775.031 kb on - strand, within zraS at 775.055 kb on + strand, within zraS at 775.055 kb on + strand, within zraS at 775.055 kb on + strand, within zraS at 775.056 kb on - strand, within zraS at 775.056 kb on - strand, within zraS at 775.086 kb on + strand, within zraS at 775.086 kb on + strand, within zraS at 775.086 kb on + strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.087 kb on - strand, within zraS at 775.132 kb on + strand, within zraS at 775.133 kb on - strand, within zraS at 775.133 kb on - strand, within zraS at 775.133 kb on - strand, within zraS at 775.233 kb on + strand, within zraS at 775.233 kb on + strand, within zraS at 775.234 kb on - strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.237 kb on + strand, within zraS at 775.238 kb on - strand, within zraS at 775.238 kb on - strand, within zraS at 775.238 kb on - strand, within zraS at 775.365 kb on + strand at 775.365 kb on + strand at 775.369 kb on + strand at 775.370 kb on - strand at 775.370 kb on - strand at 775.381 kb on - strand at 775.381 kb on - strand at 775.392 kb on + strand at 775.392 kb on + strand at 775.392 kb on + strand at 775.393 kb on - strand at 775.549 kb on + strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.550 kb on - strand, within MCAODC_03830 at 775.571 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.614 kb on + strand, within MCAODC_03830 at 775.615 kb on - strand, within MCAODC_03830 at 775.615 kb on - strand, within MCAODC_03830 at 775.667 kb on + strand at 775.667 kb on + strand at 775.668 kb on - strand at 775.731 kb on + strand, within zraP at 775.731 kb on + strand, within zraP at 775.732 kb on - strand, within zraP at 775.804 kb on + strand, within zraP at 775.804 kb on + strand, within zraP at 775.805 kb on - strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.887 kb on + strand, within zraP at 775.941 kb on - strand, within zraP at 775.949 kb on + strand, within zraP at 776.043 kb on + strand at 776.118 kb on - strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.124 kb on - strand at 776.124 kb on - strand at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.230 kb on + strand, within yjaH at 776.231 kb on - strand, within yjaH at 776.312 kb on + strand, within yjaH at 776.324 kb on - strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.356 kb on - strand, within yjaH at 776.358 kb on - strand, within yjaH
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 773,029 + zraR MCAODC_03820 0.25 -1.0 773,030 - zraR MCAODC_03820 0.25 +0.8 773,030 - zraR MCAODC_03820 0.25 +0.4 773,075 - zraR MCAODC_03820 0.28 -3.9 773,075 - zraR MCAODC_03820 0.28 -1.6 773,102 + zraR MCAODC_03820 0.30 -1.8 773,130 + zraR MCAODC_03820 0.32 +1.0 773,134 - zraR MCAODC_03820 0.33 -0.3 773,218 + zraR MCAODC_03820 0.39 +1.4 773,650 + zraR MCAODC_03820 0.71 -1.0 773,650 + zraR MCAODC_03820 0.71 +0.1 773,651 - zraR MCAODC_03820 0.71 -1.8 773,651 - zraR MCAODC_03820 0.71 -0.2 773,660 - zraR MCAODC_03820 0.72 -2.9 773,722 - zraR MCAODC_03820 0.77 +0.3 773,772 + zraR MCAODC_03820 0.81 -1.0 773,772 + zraR MCAODC_03820 0.81 +0.4 773,772 + zraR MCAODC_03820 0.81 +0.2 773,782 + zraR MCAODC_03820 0.81 +1.6 773,782 + zraR MCAODC_03820 0.81 -0.3 773,782 + zraR MCAODC_03820 0.81 +0.4 773,783 - zraR MCAODC_03820 0.81 -0.1 773,826 - zraR MCAODC_03820 0.85 +0.3 773,826 - zraR MCAODC_03820 0.85 -0.4 773,826 - zraR MCAODC_03820 0.85 +0.7 773,940 + -0.0 773,940 + -1.7 773,941 - -0.1 773,972 - -2.3 773,972 - -0.9 773,972 - +1.1 774,008 - +0.8 774,013 + -1.8 774,014 - -4.4 774,017 - +0.3 774,017 - -1.8 774,043 - -0.3 774,048 + -0.7 774,051 + +1.6 774,052 - -0.1 774,052 - -0.2 774,114 + -0.4 774,114 + +1.8 774,114 + -0.9 774,115 - +0.5 774,115 - +0.6 774,135 + -0.0 774,135 + +2.5 774,135 + +0.5 774,135 + -1.1 774,135 + -0.5 774,136 - -1.0 774,138 + -1.8 774,138 + +1.1 774,138 + +1.1 774,138 + +0.6 774,139 - +0.8 774,139 - +1.6 774,139 - -0.2 774,139 - -0.8 774,188 + zraS MCAODC_03825 0.12 +1.7 774,189 - zraS MCAODC_03825 0.12 +0.7 774,288 + zraS MCAODC_03825 0.19 +0.5 774,319 - zraS MCAODC_03825 0.21 -1.9 774,319 - zraS MCAODC_03825 0.21 +1.4 774,319 - zraS MCAODC_03825 0.21 +0.4 774,439 + zraS MCAODC_03825 0.30 -0.2 774,440 - zraS MCAODC_03825 0.30 +0.3 774,449 - zraS MCAODC_03825 0.31 -0.5 774,508 - zraS MCAODC_03825 0.35 -2.9 774,727 + zraS MCAODC_03825 0.51 +0.8 774,775 + zraS MCAODC_03825 0.54 -1.5 774,776 - zraS MCAODC_03825 0.55 -3.2 774,813 + zraS MCAODC_03825 0.57 +0.6 774,856 - zraS MCAODC_03825 0.60 +0.7 774,858 + zraS MCAODC_03825 0.60 +0.5 774,858 + zraS MCAODC_03825 0.60 +0.4 774,859 - zraS MCAODC_03825 0.61 +0.4 774,913 - zraS MCAODC_03825 0.64 -0.0 774,913 - zraS MCAODC_03825 0.64 +0.6 775,030 + zraS MCAODC_03825 0.73 -0.5 775,030 + zraS MCAODC_03825 0.73 -2.1 775,031 - zraS MCAODC_03825 0.73 -3.8 775,055 + zraS MCAODC_03825 0.75 +0.1 775,055 + zraS MCAODC_03825 0.75 +0.2 775,055 + zraS MCAODC_03825 0.75 +2.1 775,056 - zraS MCAODC_03825 0.75 +0.9 775,056 - zraS MCAODC_03825 0.75 +0.9 775,086 + zraS MCAODC_03825 0.77 +0.3 775,086 + zraS MCAODC_03825 0.77 +0.8 775,086 + zraS MCAODC_03825 0.77 -1.3 775,087 - zraS MCAODC_03825 0.77 -0.7 775,087 - zraS MCAODC_03825 0.77 +1.2 775,087 - zraS MCAODC_03825 0.77 +1.4 775,087 - zraS MCAODC_03825 0.77 +1.3 775,087 - zraS MCAODC_03825 0.77 +0.1 775,087 - zraS MCAODC_03825 0.77 +0.8 775,087 - zraS MCAODC_03825 0.77 -2.4 775,132 + zraS MCAODC_03825 0.80 -0.1 775,133 - zraS MCAODC_03825 0.80 +0.8 775,133 - zraS MCAODC_03825 0.80 -0.8 775,133 - zraS MCAODC_03825 0.80 +0.1 775,233 + zraS MCAODC_03825 0.88 -0.2 775,233 + zraS MCAODC_03825 0.88 +0.2 775,234 - zraS MCAODC_03825 0.88 +1.9 775,237 + zraS MCAODC_03825 0.88 -0.6 775,237 + zraS MCAODC_03825 0.88 +1.4 775,237 + zraS MCAODC_03825 0.88 -0.0 775,237 + zraS MCAODC_03825 0.88 +0.8 775,237 + zraS MCAODC_03825 0.88 -0.2 775,238 - zraS MCAODC_03825 0.88 +1.1 775,238 - zraS MCAODC_03825 0.88 +0.1 775,238 - zraS MCAODC_03825 0.88 -2.5 775,365 + +1.3 775,365 + +1.0 775,369 + -0.2 775,370 - -1.3 775,370 - +1.4 775,381 - +2.1 775,381 - +1.7 775,392 + +0.1 775,392 + -3.9 775,392 + +0.2 775,393 - -1.3 775,549 + MCAODC_03830 0.32 -2.5 775,550 - MCAODC_03830 0.33 -0.6 775,550 - MCAODC_03830 0.33 +1.3 775,550 - MCAODC_03830 0.33 -0.9 775,571 + MCAODC_03830 0.49 -0.4 775,614 + MCAODC_03830 0.82 +0.9 775,614 + MCAODC_03830 0.82 -0.7 775,614 + MCAODC_03830 0.82 -0.4 775,615 - MCAODC_03830 0.83 -0.6 775,615 - MCAODC_03830 0.83 +0.1 775,667 + +0.1 775,667 + +0.6 775,668 - +1.2 775,731 + zraP MCAODC_03835 0.22 -2.8 775,731 + zraP MCAODC_03835 0.22 +1.1 775,732 - zraP MCAODC_03835 0.22 -1.8 775,804 + zraP MCAODC_03835 0.39 -1.2 775,804 + zraP MCAODC_03835 0.39 +0.7 775,805 - zraP MCAODC_03835 0.39 -0.3 775,855 + zraP MCAODC_03835 0.51 -2.9 775,855 + zraP MCAODC_03835 0.51 +0.0 775,855 + zraP MCAODC_03835 0.51 -0.4 775,855 + zraP MCAODC_03835 0.51 -0.8 775,855 + zraP MCAODC_03835 0.51 +1.2 775,856 - zraP MCAODC_03835 0.51 +0.9 775,856 - zraP MCAODC_03835 0.51 +0.4 775,856 - zraP MCAODC_03835 0.51 +2.0 775,856 - zraP MCAODC_03835 0.51 -1.2 775,856 - zraP MCAODC_03835 0.51 -3.1 775,856 - zraP MCAODC_03835 0.51 -0.3 775,887 + zraP MCAODC_03835 0.58 +0.5 775,941 - zraP MCAODC_03835 0.71 -0.1 775,949 + zraP MCAODC_03835 0.73 +2.2 776,043 + +1.1 776,118 - -1.4 776,123 + -3.3 776,123 + +1.1 776,123 + -3.7 776,124 - -3.0 776,124 - +1.8 776,219 + yjaH MCAODC_03840 0.24 +1.1 776,219 + yjaH MCAODC_03840 0.24 -0.3 776,219 + yjaH MCAODC_03840 0.24 +2.0 776,230 + yjaH MCAODC_03840 0.26 -1.6 776,231 - yjaH MCAODC_03840 0.26 +0.5 776,312 + yjaH MCAODC_03840 0.39 +3.0 776,324 - yjaH MCAODC_03840 0.41 -0.4 776,355 + yjaH MCAODC_03840 0.45 -1.6 776,355 + yjaH MCAODC_03840 0.45 -1.5 776,356 - yjaH MCAODC_03840 0.46 -0.4 776,358 - yjaH MCAODC_03840 0.46 -1.7
Or see this region's nucleotide sequence