Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_02470 and MCAODC_02475 are separated by 24 nucleotides MCAODC_02475 and ytfQ are separated by 139 nucleotides ytfQ and ppa are separated by 309 nucleotides ppa and chpB are separated by 79 nucleotides
MCAODC_02470: MCAODC_02470 - Sugar transport system ATP-binding protein, at 506,453 to 506,827
_02470
MCAODC_02475: MCAODC_02475 - ABC transporter ATP-binding protein, at 506,852 to 507,544
_02475
MCAODC_02485: ytfQ - galactofuranose ABC transporter substrate-binding protein YtfQ, at 507,684 to 508,640
ytfQ
MCAODC_02490: ppa - inorganic diphosphatase, at 508,950 to 509,480
ppa
MCAODC_02495: chpB - type II toxin-antitoxin system ChpB family toxin, at 509,560 to 509,874
chpB
Position (kb) 507
508
509 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 506.696 kb on + strand, within MCAODC_02470 at 506.696 kb on + strand, within MCAODC_02470 at 506.697 kb on - strand, within MCAODC_02470 at 506.849 kb on + strand at 506.853 kb on + strand at 506.873 kb on + strand at 506.874 kb on - strand at 506.919 kb on + strand at 506.920 kb on - strand at 506.996 kb on + strand, within MCAODC_02475 at 506.997 kb on - strand, within MCAODC_02475 at 506.997 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.148 kb on - strand, within MCAODC_02475 at 507.194 kb on + strand, within MCAODC_02475 at 507.195 kb on - strand, within MCAODC_02475 at 507.227 kb on - strand, within MCAODC_02475 at 507.227 kb on - strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.230 kb on + strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.231 kb on - strand, within MCAODC_02475 at 507.236 kb on - strand, within MCAODC_02475 at 507.250 kb on + strand, within MCAODC_02475 at 507.250 kb on + strand, within MCAODC_02475 at 507.251 kb on - strand, within MCAODC_02475 at 507.369 kb on + strand, within MCAODC_02475 at 507.369 kb on + strand, within MCAODC_02475 at 507.369 kb on + strand, within MCAODC_02475 at 507.371 kb on + strand, within MCAODC_02475 at 507.371 kb on + strand, within MCAODC_02475 at 507.371 kb on + strand, within MCAODC_02475 at 507.372 kb on - strand, within MCAODC_02475 at 507.381 kb on - strand, within MCAODC_02475 at 507.471 kb on - strand, within MCAODC_02475 at 507.501 kb on - strand at 507.559 kb on + strand at 507.560 kb on - strand at 507.584 kb on + strand at 507.584 kb on + strand at 507.584 kb on + strand at 507.584 kb on + strand at 507.584 kb on + strand at 507.584 kb on + strand at 507.585 kb on - strand at 507.585 kb on - strand at 507.585 kb on - strand at 507.675 kb on + strand at 507.675 kb on + strand at 507.676 kb on - strand at 507.676 kb on - strand at 507.676 kb on - strand at 507.676 kb on - strand at 507.676 kb on - strand at 507.712 kb on - strand at 507.793 kb on + strand, within ytfQ at 507.794 kb on - strand, within ytfQ at 507.880 kb on + strand, within ytfQ at 507.880 kb on + strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.881 kb on - strand, within ytfQ at 507.948 kb on - strand, within ytfQ at 507.991 kb on + strand, within ytfQ at 507.991 kb on + strand, within ytfQ at 507.992 kb on - strand, within ytfQ at 508.058 kb on + strand, within ytfQ at 508.100 kb on + strand, within ytfQ at 508.115 kb on + strand, within ytfQ at 508.115 kb on + strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.116 kb on - strand, within ytfQ at 508.139 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.238 kb on + strand, within ytfQ at 508.239 kb on - strand, within ytfQ at 508.239 kb on - strand, within ytfQ at 508.274 kb on + strand, within ytfQ at 508.274 kb on + strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.275 kb on - strand, within ytfQ at 508.276 kb on + strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.277 kb on - strand, within ytfQ at 508.350 kb on + strand, within ytfQ at 508.351 kb on - strand, within ytfQ at 508.351 kb on - strand, within ytfQ at 508.426 kb on - strand, within ytfQ at 508.426 kb on - strand, within ytfQ at 508.621 kb on - strand at 508.626 kb on + strand at 508.626 kb on + strand at 508.641 kb on - strand at 508.660 kb on + strand at 508.660 kb on + strand at 508.664 kb on + strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.665 kb on - strand at 508.696 kb on + strand at 508.697 kb on - strand at 508.698 kb on + strand at 508.698 kb on + strand at 508.715 kb on - strand at 508.791 kb on + strand at 508.905 kb on + strand at 508.905 kb on + strand at 508.905 kb on + strand at 509.474 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.479 kb on - strand at 509.493 kb on + strand at 509.496 kb on + strand at 509.496 kb on + strand at 509.521 kb on - strand at 509.550 kb on + strand at 509.551 kb on - strand at 509.584 kb on + strand at 509.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 506,696 + MCAODC_02470 0.65 -0.7 506,696 + MCAODC_02470 0.65 +0.7 506,697 - MCAODC_02470 0.65 +0.1 506,849 + -0.5 506,853 + -0.8 506,873 + -0.3 506,874 - +0.1 506,919 + +0.2 506,920 - -2.9 506,996 + MCAODC_02475 0.21 +1.1 506,997 - MCAODC_02475 0.21 +1.3 506,997 - MCAODC_02475 0.21 -1.6 507,148 - MCAODC_02475 0.43 +0.5 507,148 - MCAODC_02475 0.43 +1.0 507,148 - MCAODC_02475 0.43 -0.6 507,148 - MCAODC_02475 0.43 -1.2 507,194 + MCAODC_02475 0.49 -1.7 507,195 - MCAODC_02475 0.49 -2.3 507,227 - MCAODC_02475 0.54 +1.4 507,227 - MCAODC_02475 0.54 -0.4 507,230 + MCAODC_02475 0.55 -0.8 507,230 + MCAODC_02475 0.55 -0.4 507,230 + MCAODC_02475 0.55 +1.5 507,230 + MCAODC_02475 0.55 -3.2 507,231 - MCAODC_02475 0.55 -1.7 507,231 - MCAODC_02475 0.55 +0.6 507,231 - MCAODC_02475 0.55 -2.8 507,236 - MCAODC_02475 0.55 -1.9 507,250 + MCAODC_02475 0.57 +1.2 507,250 + MCAODC_02475 0.57 -3.5 507,251 - MCAODC_02475 0.58 +0.5 507,369 + MCAODC_02475 0.75 -1.7 507,369 + MCAODC_02475 0.75 -1.5 507,369 + MCAODC_02475 0.75 +0.6 507,371 + MCAODC_02475 0.75 +0.6 507,371 + MCAODC_02475 0.75 +0.1 507,371 + MCAODC_02475 0.75 +0.4 507,372 - MCAODC_02475 0.75 +0.7 507,381 - MCAODC_02475 0.76 -0.1 507,471 - MCAODC_02475 0.89 -0.5 507,501 - +1.6 507,559 + -1.9 507,560 - +0.2 507,584 + -1.6 507,584 + +0.4 507,584 + +0.4 507,584 + -3.6 507,584 + -0.2 507,584 + -1.3 507,585 - -1.3 507,585 - -0.6 507,585 - +0.2 507,675 + -0.7 507,675 + -2.3 507,676 - -0.6 507,676 - -0.8 507,676 - +1.2 507,676 - -2.7 507,676 - -0.8 507,712 - +0.4 507,793 + ytfQ MCAODC_02485 0.11 +1.0 507,794 - ytfQ MCAODC_02485 0.11 +0.8 507,880 + ytfQ MCAODC_02485 0.20 +2.4 507,880 + ytfQ MCAODC_02485 0.20 -1.2 507,881 - ytfQ MCAODC_02485 0.21 +0.9 507,881 - ytfQ MCAODC_02485 0.21 +1.4 507,881 - ytfQ MCAODC_02485 0.21 -0.3 507,881 - ytfQ MCAODC_02485 0.21 +2.0 507,881 - ytfQ MCAODC_02485 0.21 +0.6 507,881 - ytfQ MCAODC_02485 0.21 -3.0 507,881 - ytfQ MCAODC_02485 0.21 +0.9 507,948 - ytfQ MCAODC_02485 0.28 -0.2 507,991 + ytfQ MCAODC_02485 0.32 +1.9 507,991 + ytfQ MCAODC_02485 0.32 -0.2 507,992 - ytfQ MCAODC_02485 0.32 +1.1 508,058 + ytfQ MCAODC_02485 0.39 -1.7 508,100 + ytfQ MCAODC_02485 0.43 +0.7 508,115 + ytfQ MCAODC_02485 0.45 +0.1 508,115 + ytfQ MCAODC_02485 0.45 -2.4 508,116 - ytfQ MCAODC_02485 0.45 +1.1 508,116 - ytfQ MCAODC_02485 0.45 +0.5 508,116 - ytfQ MCAODC_02485 0.45 +0.2 508,139 + ytfQ MCAODC_02485 0.48 +1.3 508,238 + ytfQ MCAODC_02485 0.58 +2.4 508,238 + ytfQ MCAODC_02485 0.58 -2.6 508,238 + ytfQ MCAODC_02485 0.58 -2.5 508,239 - ytfQ MCAODC_02485 0.58 +0.3 508,239 - ytfQ MCAODC_02485 0.58 +0.5 508,274 + ytfQ MCAODC_02485 0.62 +0.4 508,274 + ytfQ MCAODC_02485 0.62 +0.9 508,275 - ytfQ MCAODC_02485 0.62 -0.1 508,275 - ytfQ MCAODC_02485 0.62 +2.6 508,275 - ytfQ MCAODC_02485 0.62 -1.4 508,275 - ytfQ MCAODC_02485 0.62 -0.5 508,275 - ytfQ MCAODC_02485 0.62 -1.0 508,276 + ytfQ MCAODC_02485 0.62 -3.8 508,277 - ytfQ MCAODC_02485 0.62 -0.6 508,277 - ytfQ MCAODC_02485 0.62 -3.2 508,277 - ytfQ MCAODC_02485 0.62 +0.3 508,350 + ytfQ MCAODC_02485 0.70 -2.3 508,351 - ytfQ MCAODC_02485 0.70 +0.9 508,351 - ytfQ MCAODC_02485 0.70 +2.0 508,426 - ytfQ MCAODC_02485 0.78 +1.8 508,426 - ytfQ MCAODC_02485 0.78 +1.1 508,621 - -0.6 508,626 + +2.1 508,626 + +1.4 508,641 - -0.3 508,660 + -3.6 508,660 + +0.6 508,664 + +1.4 508,665 - +0.1 508,665 - +0.2 508,665 - +0.0 508,665 - -0.1 508,696 + -0.7 508,697 - +0.1 508,698 + +0.8 508,698 + +1.5 508,715 - -0.4 508,791 + +0.8 508,905 + +1.6 508,905 + +0.5 508,905 + +2.1 509,474 + +2.4 509,478 + +0.7 509,478 + -0.4 509,478 + +0.1 509,479 - -2.4 509,493 + -3.2 509,496 + -0.6 509,496 + +0.7 509,521 - +0.4 509,550 + +0.0 509,551 - -1.6 509,584 + -3.0 509,585 - +1.5
Or see this region's nucleotide sequence