Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mgtA and mgtL are separated by 140 nucleotides mgtL and treR are separated by 184 nucleotides
MCAODC_02385: mgtA - magnesium-translocating P-type ATPase, at 488,223 to 490,919
mgtA
MCAODC_02390: mgtL - mgtA leader peptide, at 491,060 to 491,113
mgtL
MCAODC_02395: treR - trehalose operon repressor TreR, at 491,298 to 492,245
treR
Position (kb) 491
492 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 490.148 kb on + strand, within mgtA at 490.149 kb on - strand, within mgtA at 490.197 kb on - strand, within mgtA at 490.197 kb on - strand, within mgtA at 490.251 kb on - strand, within mgtA at 490.325 kb on + strand, within mgtA at 490.325 kb on + strand, within mgtA at 490.326 kb on - strand, within mgtA at 490.326 kb on - strand, within mgtA at 490.329 kb on + strand, within mgtA at 490.329 kb on + strand, within mgtA at 490.329 kb on + strand, within mgtA at 490.329 kb on + strand, within mgtA at 490.330 kb on - strand, within mgtA at 490.330 kb on - strand, within mgtA at 490.330 kb on - strand, within mgtA at 490.330 kb on - strand, within mgtA at 490.346 kb on + strand, within mgtA at 490.346 kb on + strand, within mgtA at 490.347 kb on - strand, within mgtA at 490.347 kb on - strand, within mgtA at 490.347 kb on - strand, within mgtA at 490.365 kb on + strand, within mgtA at 490.365 kb on + strand, within mgtA at 490.365 kb on + strand, within mgtA at 490.366 kb on - strand, within mgtA at 490.368 kb on - strand, within mgtA at 490.430 kb on + strand, within mgtA at 490.454 kb on + strand, within mgtA at 490.491 kb on - strand, within mgtA at 490.533 kb on - strand, within mgtA at 490.566 kb on + strand, within mgtA at 490.566 kb on + strand, within mgtA at 490.566 kb on + strand, within mgtA at 490.590 kb on - strand, within mgtA at 490.608 kb on + strand, within mgtA at 490.613 kb on + strand, within mgtA at 490.613 kb on + strand, within mgtA at 490.613 kb on + strand, within mgtA at 490.617 kb on - strand, within mgtA at 490.630 kb on + strand, within mgtA at 490.630 kb on + strand, within mgtA at 490.630 kb on + strand, within mgtA at 490.641 kb on + strand, within mgtA at 490.641 kb on + strand, within mgtA at 490.642 kb on - strand, within mgtA at 490.647 kb on + strand, within mgtA at 490.648 kb on - strand, within mgtA at 490.678 kb on - strand at 490.682 kb on + strand at 490.683 kb on - strand at 490.729 kb on - strand at 490.806 kb on + strand at 490.807 kb on - strand at 490.826 kb on + strand at 490.882 kb on - strand at 490.882 kb on - strand at 490.882 kb on - strand at 490.919 kb on + strand at 490.919 kb on + strand at 490.920 kb on - strand at 490.990 kb on + strand at 491.013 kb on - strand at 491.113 kb on + strand at 491.113 kb on + strand at 491.113 kb on + strand at 491.113 kb on + strand at 491.113 kb on + strand at 491.114 kb on - strand at 491.114 kb on - strand at 491.114 kb on - strand at 491.114 kb on - strand at 491.115 kb on + strand at 491.116 kb on - strand at 491.116 kb on - strand at 491.126 kb on - strand at 491.147 kb on + strand at 491.148 kb on - strand at 491.167 kb on + strand at 491.168 kb on - strand at 491.189 kb on - strand at 491.189 kb on - strand at 491.190 kb on + strand at 491.190 kb on + strand at 491.191 kb on - strand at 491.207 kb on + strand at 491.258 kb on + strand at 491.259 kb on - strand at 491.268 kb on + strand at 491.269 kb on - strand at 491.272 kb on + strand at 491.272 kb on + strand at 491.272 kb on + strand at 491.273 kb on - strand at 491.335 kb on + strand at 491.355 kb on - strand at 491.504 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.562 kb on + strand, within treR at 491.563 kb on - strand, within treR at 491.563 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.575 kb on - strand, within treR at 491.614 kb on + strand, within treR at 491.615 kb on - strand, within treR at 491.615 kb on - strand, within treR at 491.648 kb on + strand, within treR at 491.652 kb on - strand, within treR at 491.662 kb on + strand, within treR at 491.662 kb on + strand, within treR at 491.663 kb on - strand, within treR at 491.663 kb on - strand, within treR at 491.687 kb on - strand, within treR at 491.687 kb on - strand, within treR at 491.767 kb on - strand, within treR at 491.808 kb on + strand, within treR at 491.809 kb on - strand, within treR at 491.825 kb on + strand, within treR at 491.825 kb on + strand, within treR at 491.825 kb on + strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.826 kb on - strand, within treR at 491.828 kb on + strand, within treR at 491.828 kb on + strand, within treR at 491.890 kb on - strand, within treR at 491.913 kb on - strand, within treR at 491.948 kb on + strand, within treR at 491.948 kb on + strand, within treR at 491.949 kb on - strand, within treR at 491.962 kb on - strand, within treR at 491.971 kb on + strand, within treR at 491.971 kb on + strand, within treR at 491.971 kb on + strand, within treR at 491.972 kb on - strand, within treR at 491.972 kb on - strand, within treR at 491.984 kb on + strand, within treR at 491.997 kb on - strand, within treR at 492.004 kb on + strand, within treR at 492.005 kb on - strand, within treR at 492.041 kb on + strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.042 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.046 kb on - strand, within treR at 492.095 kb on + strand, within treR at 492.095 kb on + strand, within treR at 492.096 kb on - strand, within treR at 492.096 kb on - strand, within treR at 492.096 kb on - strand, within treR
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 490,148 + mgtA MCAODC_02385 0.71 +1.0 490,149 - mgtA MCAODC_02385 0.71 +1.2 490,197 - mgtA MCAODC_02385 0.73 +0.3 490,197 - mgtA MCAODC_02385 0.73 +1.4 490,251 - mgtA MCAODC_02385 0.75 -1.5 490,325 + mgtA MCAODC_02385 0.78 -0.2 490,325 + mgtA MCAODC_02385 0.78 +0.7 490,326 - mgtA MCAODC_02385 0.78 -4.1 490,326 - mgtA MCAODC_02385 0.78 +1.1 490,329 + mgtA MCAODC_02385 0.78 +1.0 490,329 + mgtA MCAODC_02385 0.78 -1.8 490,329 + mgtA MCAODC_02385 0.78 +2.4 490,329 + mgtA MCAODC_02385 0.78 -3.1 490,330 - mgtA MCAODC_02385 0.78 -2.1 490,330 - mgtA MCAODC_02385 0.78 -2.3 490,330 - mgtA MCAODC_02385 0.78 +0.9 490,330 - mgtA MCAODC_02385 0.78 -2.7 490,346 + mgtA MCAODC_02385 0.79 -3.5 490,346 + mgtA MCAODC_02385 0.79 +0.0 490,347 - mgtA MCAODC_02385 0.79 +1.0 490,347 - mgtA MCAODC_02385 0.79 +1.1 490,347 - mgtA MCAODC_02385 0.79 -1.0 490,365 + mgtA MCAODC_02385 0.79 -0.9 490,365 + mgtA MCAODC_02385 0.79 -0.9 490,365 + mgtA MCAODC_02385 0.79 +0.2 490,366 - mgtA MCAODC_02385 0.79 +1.3 490,368 - mgtA MCAODC_02385 0.80 +0.8 490,430 + mgtA MCAODC_02385 0.82 -0.7 490,454 + mgtA MCAODC_02385 0.83 -0.4 490,491 - mgtA MCAODC_02385 0.84 +0.6 490,533 - mgtA MCAODC_02385 0.86 -0.6 490,566 + mgtA MCAODC_02385 0.87 -0.7 490,566 + mgtA MCAODC_02385 0.87 +1.3 490,566 + mgtA MCAODC_02385 0.87 -0.7 490,590 - mgtA MCAODC_02385 0.88 -0.8 490,608 + mgtA MCAODC_02385 0.88 -4.3 490,613 + mgtA MCAODC_02385 0.89 +0.2 490,613 + mgtA MCAODC_02385 0.89 -0.8 490,613 + mgtA MCAODC_02385 0.89 -1.2 490,617 - mgtA MCAODC_02385 0.89 +0.6 490,630 + mgtA MCAODC_02385 0.89 -2.9 490,630 + mgtA MCAODC_02385 0.89 -0.5 490,630 + mgtA MCAODC_02385 0.89 -2.5 490,641 + mgtA MCAODC_02385 0.90 +0.6 490,641 + mgtA MCAODC_02385 0.90 +0.1 490,642 - mgtA MCAODC_02385 0.90 -0.4 490,647 + mgtA MCAODC_02385 0.90 -0.3 490,648 - mgtA MCAODC_02385 0.90 -0.3 490,678 - +1.6 490,682 + +0.8 490,683 - -2.1 490,729 - -4.4 490,806 + +2.0 490,807 - +0.7 490,826 + -0.2 490,882 - +2.4 490,882 - +0.7 490,882 - -1.7 490,919 + +0.8 490,919 + -0.4 490,920 - -0.1 490,990 + +1.7 491,013 - +2.1 491,113 + +1.4 491,113 + -0.9 491,113 + -0.3 491,113 + +1.2 491,113 + -1.4 491,114 - -1.2 491,114 - -0.2 491,114 - -1.0 491,114 - +0.4 491,115 + +0.7 491,116 - -1.4 491,116 - +0.5 491,126 - -0.6 491,147 + -0.1 491,148 - +0.9 491,167 + +0.5 491,168 - +0.8 491,189 - +1.1 491,189 - +2.3 491,190 + +1.0 491,190 + -3.6 491,191 - -1.1 491,207 + +0.4 491,258 + +0.6 491,259 - -3.1 491,268 + +0.5 491,269 - +0.6 491,272 + -0.1 491,272 + -0.4 491,272 + +0.1 491,273 - -1.0 491,335 + -1.1 491,355 - -0.7 491,504 + treR MCAODC_02395 0.22 +0.4 491,562 + treR MCAODC_02395 0.28 -0.0 491,562 + treR MCAODC_02395 0.28 -0.1 491,562 + treR MCAODC_02395 0.28 +1.6 491,563 - treR MCAODC_02395 0.28 -2.9 491,563 - treR MCAODC_02395 0.28 -0.3 491,575 - treR MCAODC_02395 0.29 -1.3 491,575 - treR MCAODC_02395 0.29 -1.7 491,575 - treR MCAODC_02395 0.29 +0.4 491,614 + treR MCAODC_02395 0.33 -4.5 491,615 - treR MCAODC_02395 0.33 -0.3 491,615 - treR MCAODC_02395 0.33 -2.4 491,648 + treR MCAODC_02395 0.37 -3.7 491,652 - treR MCAODC_02395 0.37 +0.6 491,662 + treR MCAODC_02395 0.38 +0.5 491,662 + treR MCAODC_02395 0.38 -0.2 491,663 - treR MCAODC_02395 0.39 +0.3 491,663 - treR MCAODC_02395 0.39 -0.1 491,687 - treR MCAODC_02395 0.41 -0.6 491,687 - treR MCAODC_02395 0.41 -1.2 491,767 - treR MCAODC_02395 0.49 -1.2 491,808 + treR MCAODC_02395 0.54 +0.7 491,809 - treR MCAODC_02395 0.54 +1.2 491,825 + treR MCAODC_02395 0.56 +0.2 491,825 + treR MCAODC_02395 0.56 +0.5 491,825 + treR MCAODC_02395 0.56 +0.5 491,826 - treR MCAODC_02395 0.56 -1.3 491,826 - treR MCAODC_02395 0.56 -1.9 491,826 - treR MCAODC_02395 0.56 +1.3 491,826 - treR MCAODC_02395 0.56 -0.1 491,826 - treR MCAODC_02395 0.56 -0.7 491,826 - treR MCAODC_02395 0.56 -1.2 491,828 + treR MCAODC_02395 0.56 +0.1 491,828 + treR MCAODC_02395 0.56 -2.7 491,890 - treR MCAODC_02395 0.62 +1.1 491,913 - treR MCAODC_02395 0.65 -4.0 491,948 + treR MCAODC_02395 0.69 -0.6 491,948 + treR MCAODC_02395 0.69 -0.4 491,949 - treR MCAODC_02395 0.69 +1.3 491,962 - treR MCAODC_02395 0.70 -0.8 491,971 + treR MCAODC_02395 0.71 -2.2 491,971 + treR MCAODC_02395 0.71 -0.2 491,971 + treR MCAODC_02395 0.71 -2.7 491,972 - treR MCAODC_02395 0.71 +0.6 491,972 - treR MCAODC_02395 0.71 +1.1 491,984 + treR MCAODC_02395 0.72 +1.1 491,997 - treR MCAODC_02395 0.74 +0.0 492,004 + treR MCAODC_02395 0.74 -2.6 492,005 - treR MCAODC_02395 0.75 +1.1 492,041 + treR MCAODC_02395 0.78 -0.2 492,042 - treR MCAODC_02395 0.78 -0.9 492,042 - treR MCAODC_02395 0.78 -2.2 492,042 - treR MCAODC_02395 0.78 +0.2 492,042 - treR MCAODC_02395 0.78 -1.2 492,046 - treR MCAODC_02395 0.79 -1.2 492,046 - treR MCAODC_02395 0.79 -1.0 492,046 - treR MCAODC_02395 0.79 -1.6 492,046 - treR MCAODC_02395 0.79 -1.4 492,046 - treR MCAODC_02395 0.79 -0.8 492,095 + treR MCAODC_02395 0.84 +0.3 492,095 + treR MCAODC_02395 0.84 +0.5 492,096 - treR MCAODC_02395 0.84 -0.7 492,096 - treR MCAODC_02395 0.84 -0.6 492,096 - treR MCAODC_02395 0.84 -1.6
Or see this region's nucleotide sequence