Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01950 and gmrSD are separated by 47 nucleotides gmrSD and yjiS are separated by 96 nucleotides yjiS and yjiR are separated by 176 nucleotides
MCAODC_01950: MCAODC_01950 - DUF1524 domain-containing protein, at 378,397 to 379,560
_01950
MCAODC_01955: gmrSD - DUF262 domain-containing protein, at 379,608 to 380,489
gmrSD
MCAODC_01960: yjiS - DUF1127 domain-containing protein, at 380,586 to 380,750
yjiS
MCAODC_01965: yjiR - Uncharacterized HTH-type transcriptional regulator YjiR, at 380,927 to 382,339
yjiR
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 378.642 kb on + strand, within MCAODC_01950 at 378.642 kb on + strand, within MCAODC_01950 at 378.643 kb on - strand, within MCAODC_01950 at 378.643 kb on - strand, within MCAODC_01950 at 378.643 kb on - strand, within MCAODC_01950 at 378.644 kb on + strand, within MCAODC_01950 at 378.644 kb on + strand, within MCAODC_01950 at 378.645 kb on - strand, within MCAODC_01950 at 378.645 kb on - strand, within MCAODC_01950 at 378.645 kb on - strand, within MCAODC_01950 at 378.750 kb on - strand, within MCAODC_01950 at 378.765 kb on - strand, within MCAODC_01950 at 378.802 kb on + strand, within MCAODC_01950 at 378.943 kb on - strand, within MCAODC_01950 at 379.000 kb on - strand, within MCAODC_01950 at 379.000 kb on - strand, within MCAODC_01950 at 379.000 kb on - strand, within MCAODC_01950 at 379.010 kb on - strand, within MCAODC_01950 at 379.029 kb on + strand, within MCAODC_01950 at 379.030 kb on - strand, within MCAODC_01950 at 379.030 kb on - strand, within MCAODC_01950 at 379.030 kb on - strand, within MCAODC_01950 at 379.113 kb on + strand, within MCAODC_01950 at 379.114 kb on - strand, within MCAODC_01950 at 379.116 kb on + strand, within MCAODC_01950 at 379.117 kb on - strand, within MCAODC_01950 at 379.181 kb on + strand, within MCAODC_01950 at 379.181 kb on + strand, within MCAODC_01950 at 379.260 kb on - strand, within MCAODC_01950 at 379.326 kb on - strand, within MCAODC_01950 at 379.412 kb on - strand, within MCAODC_01950 at 379.451 kb on + strand at 379.498 kb on + strand at 379.568 kb on + strand at 379.571 kb on + strand at 379.581 kb on - strand at 379.581 kb on - strand at 379.584 kb on + strand at 379.585 kb on - strand at 379.610 kb on - strand at 379.650 kb on + strand at 379.661 kb on + strand at 379.662 kb on - strand at 379.705 kb on + strand, within gmrSD at 379.705 kb on + strand, within gmrSD at 379.705 kb on + strand, within gmrSD at 379.716 kb on - strand, within gmrSD at 379.738 kb on + strand, within gmrSD at 379.786 kb on + strand, within gmrSD at 379.787 kb on - strand, within gmrSD at 379.787 kb on - strand, within gmrSD at 379.787 kb on - strand, within gmrSD at 379.787 kb on - strand, within gmrSD at 379.877 kb on + strand, within gmrSD at 379.960 kb on - strand, within gmrSD at 379.960 kb on - strand, within gmrSD at 380.035 kb on + strand, within gmrSD at 380.149 kb on + strand, within gmrSD at 380.294 kb on - strand, within gmrSD at 380.307 kb on + strand, within gmrSD at 380.307 kb on + strand, within gmrSD at 380.308 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.310 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.312 kb on - strand, within gmrSD at 380.341 kb on - strand, within gmrSD at 380.341 kb on - strand, within gmrSD at 380.342 kb on + strand, within gmrSD at 380.343 kb on - strand, within gmrSD at 380.410 kb on + strand at 380.411 kb on - strand at 380.422 kb on + strand at 380.432 kb on + strand at 380.466 kb on + strand at 380.566 kb on - strand at 380.580 kb on + strand at 380.581 kb on - strand at 380.581 kb on - strand at 380.581 kb on - strand at 380.646 kb on + strand, within yjiS at 380.646 kb on + strand, within yjiS at 380.765 kb on + strand at 380.766 kb on - strand at 380.806 kb on + strand at 380.807 kb on - strand at 380.807 kb on - strand at 380.819 kb on - strand at 380.904 kb on - strand at 380.922 kb on - strand at 380.955 kb on + strand at 380.955 kb on + strand at 380.956 kb on - strand at 380.956 kb on - strand at 380.956 kb on - strand at 380.956 kb on - strand at 381.021 kb on + strand at 381.133 kb on + strand, within yjiR at 381.133 kb on + strand, within yjiR at 381.214 kb on + strand, within yjiR at 381.309 kb on + strand, within yjiR at 381.310 kb on - strand, within yjiR at 381.328 kb on + strand, within yjiR at 381.329 kb on - strand, within yjiR at 381.375 kb on + strand, within yjiR at 381.376 kb on - strand, within yjiR
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 378,642 + MCAODC_01950 0.21 -3.7 378,642 + MCAODC_01950 0.21 +1.9 378,643 - MCAODC_01950 0.21 +0.0 378,643 - MCAODC_01950 0.21 +0.9 378,643 - MCAODC_01950 0.21 +1.1 378,644 + MCAODC_01950 0.21 +0.5 378,644 + MCAODC_01950 0.21 -0.2 378,645 - MCAODC_01950 0.21 -4.0 378,645 - MCAODC_01950 0.21 -1.0 378,645 - MCAODC_01950 0.21 +2.4 378,750 - MCAODC_01950 0.30 -0.8 378,765 - MCAODC_01950 0.32 +1.1 378,802 + MCAODC_01950 0.35 -1.2 378,943 - MCAODC_01950 0.47 -2.5 379,000 - MCAODC_01950 0.52 +0.8 379,000 - MCAODC_01950 0.52 -0.3 379,000 - MCAODC_01950 0.52 +0.6 379,010 - MCAODC_01950 0.53 +1.2 379,029 + MCAODC_01950 0.54 +0.9 379,030 - MCAODC_01950 0.54 +0.9 379,030 - MCAODC_01950 0.54 +0.9 379,030 - MCAODC_01950 0.54 -1.8 379,113 + MCAODC_01950 0.62 +0.3 379,114 - MCAODC_01950 0.62 -3.2 379,116 + MCAODC_01950 0.62 +1.6 379,117 - MCAODC_01950 0.62 -2.0 379,181 + MCAODC_01950 0.67 +1.8 379,181 + MCAODC_01950 0.67 +1.4 379,260 - MCAODC_01950 0.74 -2.2 379,326 - MCAODC_01950 0.80 -0.2 379,412 - MCAODC_01950 0.87 -2.3 379,451 + +0.6 379,498 + +0.8 379,568 + +1.7 379,571 + +2.8 379,581 - -3.7 379,581 - +0.9 379,584 + +0.4 379,585 - -1.4 379,610 - +0.8 379,650 + -0.4 379,661 + +0.5 379,662 - +1.6 379,705 + gmrSD MCAODC_01955 0.11 -0.9 379,705 + gmrSD MCAODC_01955 0.11 +2.4 379,705 + gmrSD MCAODC_01955 0.11 -2.0 379,716 - gmrSD MCAODC_01955 0.12 +0.6 379,738 + gmrSD MCAODC_01955 0.15 +0.6 379,786 + gmrSD MCAODC_01955 0.20 +1.2 379,787 - gmrSD MCAODC_01955 0.20 -0.0 379,787 - gmrSD MCAODC_01955 0.20 +0.4 379,787 - gmrSD MCAODC_01955 0.20 +0.2 379,787 - gmrSD MCAODC_01955 0.20 -0.1 379,877 + gmrSD MCAODC_01955 0.30 +0.8 379,960 - gmrSD MCAODC_01955 0.40 -0.2 379,960 - gmrSD MCAODC_01955 0.40 -1.3 380,035 + gmrSD MCAODC_01955 0.48 +2.1 380,149 + gmrSD MCAODC_01955 0.61 -2.4 380,294 - gmrSD MCAODC_01955 0.78 +1.0 380,307 + gmrSD MCAODC_01955 0.79 +0.2 380,307 + gmrSD MCAODC_01955 0.79 +1.7 380,308 - gmrSD MCAODC_01955 0.79 -0.9 380,310 - gmrSD MCAODC_01955 0.80 +0.4 380,310 - gmrSD MCAODC_01955 0.80 +0.0 380,310 - gmrSD MCAODC_01955 0.80 +0.2 380,312 - gmrSD MCAODC_01955 0.80 +1.9 380,312 - gmrSD MCAODC_01955 0.80 +0.1 380,312 - gmrSD MCAODC_01955 0.80 +1.5 380,341 - gmrSD MCAODC_01955 0.83 -1.9 380,341 - gmrSD MCAODC_01955 0.83 +0.5 380,342 + gmrSD MCAODC_01955 0.83 -0.0 380,343 - gmrSD MCAODC_01955 0.83 +1.7 380,410 + -1.0 380,411 - +1.6 380,422 + -0.6 380,432 + -0.9 380,466 + +1.0 380,566 - -1.4 380,580 + +0.1 380,581 - -1.6 380,581 - +1.5 380,581 - -0.5 380,646 + yjiS MCAODC_01960 0.36 -0.5 380,646 + yjiS MCAODC_01960 0.36 +1.4 380,765 + -3.4 380,766 - -0.0 380,806 + -0.1 380,807 - -0.3 380,807 - -0.3 380,819 - -1.1 380,904 - +0.2 380,922 - +1.0 380,955 + +1.7 380,955 + -2.3 380,956 - -0.3 380,956 - -2.8 380,956 - -0.9 380,956 - -0.6 381,021 + -0.6 381,133 + yjiR MCAODC_01965 0.15 -0.1 381,133 + yjiR MCAODC_01965 0.15 -0.1 381,214 + yjiR MCAODC_01965 0.20 +0.2 381,309 + yjiR MCAODC_01965 0.27 +0.9 381,310 - yjiR MCAODC_01965 0.27 +0.2 381,328 + yjiR MCAODC_01965 0.28 -1.7 381,329 - yjiR MCAODC_01965 0.28 -0.1 381,375 + yjiR MCAODC_01965 0.32 +0.5 381,376 - yjiR MCAODC_01965 0.32 +0.4
Or see this region's nucleotide sequence