Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01915 and gmrSD are separated by 8 nucleotides gmrSD and hsdR are separated by 277 nucleotides hsdR and hsdM are separated by 66 nucleotides
MCAODC_01915: MCAODC_01915 - DUF262 domain-containing protein, at 370,137 to 371,495
_01915
MCAODC_01920: gmrSD - DUF262 domain-containing protein, at 371,504 to 371,788
gmrSD
MCAODC_01925: hsdR - DEAD/DEAH box helicase, at 372,066 to 374,498
hsdR
MCAODC_01930: hsdM - Type I restriction enzyme EcoEI methylase subunit, at 374,565 to 376,034
hsdM
Position (kb) 372
373
374
375 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 371.187 kb on + strand, within MCAODC_01915 at 371.295 kb on + strand, within MCAODC_01915 at 371.402 kb on - strand at 371.611 kb on + strand, within gmrSD at 371.665 kb on - strand, within gmrSD at 371.693 kb on - strand, within gmrSD at 371.771 kb on - strand at 371.771 kb on - strand at 371.793 kb on + strand at 371.851 kb on + strand at 371.944 kb on - strand at 371.945 kb on + strand at 371.954 kb on + strand at 371.955 kb on - strand at 371.955 kb on - strand at 371.972 kb on + strand at 371.976 kb on + strand at 371.976 kb on + strand at 372.015 kb on + strand at 372.025 kb on - strand at 372.028 kb on + strand at 372.029 kb on - strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.049 kb on - strand at 372.061 kb on - strand at 372.082 kb on + strand at 372.083 kb on - strand at 372.083 kb on - strand at 372.194 kb on + strand at 372.194 kb on + strand at 372.259 kb on - strand at 372.259 kb on - strand at 372.345 kb on + strand, within hsdR at 372.345 kb on + strand, within hsdR at 372.346 kb on - strand, within hsdR at 372.399 kb on - strand, within hsdR at 372.399 kb on - strand, within hsdR at 372.448 kb on + strand, within hsdR at 372.448 kb on + strand, within hsdR at 372.511 kb on - strand, within hsdR at 372.546 kb on + strand, within hsdR at 372.546 kb on + strand, within hsdR at 372.547 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.676 kb on - strand, within hsdR at 372.753 kb on - strand, within hsdR at 372.841 kb on - strand, within hsdR at 372.862 kb on - strand, within hsdR at 372.870 kb on - strand, within hsdR at 372.870 kb on - strand, within hsdR at 372.871 kb on + strand, within hsdR at 372.872 kb on - strand, within hsdR at 372.872 kb on - strand, within hsdR at 372.872 kb on - strand, within hsdR at 373.005 kb on - strand, within hsdR at 373.089 kb on + strand, within hsdR at 373.095 kb on + strand, within hsdR at 373.096 kb on - strand, within hsdR at 373.096 kb on - strand, within hsdR at 373.096 kb on - strand, within hsdR at 373.103 kb on - strand, within hsdR at 373.138 kb on - strand, within hsdR at 373.138 kb on - strand, within hsdR at 373.139 kb on + strand, within hsdR at 373.139 kb on + strand, within hsdR at 373.139 kb on + strand, within hsdR at 373.140 kb on - strand, within hsdR at 373.140 kb on - strand, within hsdR at 373.140 kb on - strand, within hsdR at 373.157 kb on + strand, within hsdR at 373.158 kb on - strand, within hsdR at 373.207 kb on + strand, within hsdR at 373.208 kb on - strand, within hsdR at 373.232 kb on + strand, within hsdR at 373.232 kb on + strand, within hsdR at 373.232 kb on + strand, within hsdR at 373.233 kb on - strand, within hsdR at 373.233 kb on - strand, within hsdR at 373.233 kb on - strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.236 kb on + strand, within hsdR at 373.237 kb on - strand, within hsdR at 373.237 kb on - strand, within hsdR at 373.237 kb on - strand, within hsdR at 373.237 kb on - strand, within hsdR at 373.237 kb on - strand, within hsdR at 373.239 kb on - strand, within hsdR at 373.239 kb on - strand, within hsdR at 373.268 kb on - strand, within hsdR at 373.323 kb on - strand, within hsdR at 373.380 kb on - strand, within hsdR at 373.434 kb on + strand, within hsdR at 373.435 kb on - strand, within hsdR at 373.435 kb on - strand, within hsdR at 373.435 kb on - strand, within hsdR at 373.435 kb on - strand, within hsdR at 373.509 kb on + strand, within hsdR at 373.559 kb on + strand, within hsdR at 373.560 kb on - strand, within hsdR at 373.560 kb on - strand, within hsdR at 373.560 kb on - strand, within hsdR at 373.577 kb on - strand, within hsdR at 373.635 kb on - strand, within hsdR at 373.671 kb on - strand, within hsdR at 373.831 kb on + strand, within hsdR at 373.878 kb on - strand, within hsdR at 373.945 kb on + strand, within hsdR at 373.977 kb on + strand, within hsdR at 373.977 kb on + strand, within hsdR at 373.978 kb on - strand, within hsdR at 373.980 kb on + strand, within hsdR at 374.023 kb on - strand, within hsdR at 374.023 kb on - strand, within hsdR at 374.146 kb on + strand, within hsdR at 374.165 kb on + strand, within hsdR at 374.200 kb on + strand, within hsdR at 374.200 kb on + strand, within hsdR at 374.200 kb on + strand, within hsdR at 374.201 kb on - strand, within hsdR at 374.205 kb on + strand, within hsdR at 374.205 kb on + strand, within hsdR at 374.205 kb on + strand, within hsdR at 374.206 kb on - strand, within hsdR at 374.206 kb on - strand, within hsdR at 374.206 kb on - strand, within hsdR at 374.206 kb on - strand, within hsdR at 374.206 kb on - strand, within hsdR at 374.262 kb on + strand at 374.263 kb on - strand at 374.274 kb on + strand at 374.274 kb on + strand at 374.320 kb on - strand at 374.351 kb on + strand at 374.406 kb on - strand at 374.406 kb on - strand at 374.408 kb on + strand at 374.408 kb on + strand at 374.409 kb on - strand at 374.438 kb on + strand at 374.439 kb on - strand at 374.472 kb on + strand at 374.473 kb on - strand at 374.473 kb on - strand at 374.560 kb on - strand at 374.571 kb on - strand at 374.594 kb on - strand at 374.600 kb on + strand at 374.600 kb on + strand at 374.600 kb on + strand at 374.601 kb on - strand at 374.601 kb on - strand at 374.601 kb on - strand at 374.601 kb on - strand at 374.603 kb on + strand at 374.717 kb on + strand, within hsdM at 374.717 kb on + strand, within hsdM at 374.717 kb on + strand, within hsdM at 374.718 kb on - strand, within hsdM at 374.721 kb on + strand, within hsdM at 374.745 kb on + strand, within hsdM at 374.746 kb on - strand, within hsdM at 374.746 kb on - strand, within hsdM at 374.746 kb on - strand, within hsdM at 374.749 kb on + strand, within hsdM at 374.904 kb on + strand, within hsdM at 374.904 kb on + strand, within hsdM at 374.904 kb on + strand, within hsdM at 374.904 kb on + strand, within hsdM at 374.905 kb on - strand, within hsdM at 374.905 kb on - strand, within hsdM at 374.905 kb on - strand, within hsdM at 374.905 kb on - strand, within hsdM at 374.905 kb on - strand, within hsdM at 374.906 kb on + strand, within hsdM at 374.906 kb on + strand, within hsdM at 374.907 kb on - strand, within hsdM at 374.911 kb on - strand, within hsdM at 374.911 kb on - strand, within hsdM at 374.911 kb on - strand, within hsdM at 374.929 kb on + strand, within hsdM at 374.930 kb on - strand, within hsdM at 374.948 kb on + strand, within hsdM at 374.949 kb on - strand, within hsdM at 374.969 kb on + strand, within hsdM at 375.003 kb on - strand, within hsdM at 375.006 kb on + strand, within hsdM at 375.006 kb on + strand, within hsdM at 375.007 kb on - strand, within hsdM at 375.058 kb on - strand, within hsdM at 375.060 kb on - strand, within hsdM at 375.083 kb on + strand, within hsdM at 375.083 kb on + strand, within hsdM at 375.122 kb on + strand, within hsdM at 375.175 kb on + strand, within hsdM at 375.176 kb on - strand, within hsdM at 375.176 kb on - strand, within hsdM at 375.176 kb on - strand, within hsdM at 375.187 kb on - strand, within hsdM at 375.278 kb on + strand, within hsdM at 375.278 kb on + strand, within hsdM at 375.279 kb on - strand, within hsdM at 375.279 kb on - strand, within hsdM at 375.279 kb on - strand, within hsdM at 375.377 kb on + strand, within hsdM at 375.488 kb on - strand, within hsdM at 375.488 kb on - strand, within hsdM
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 371,187 + MCAODC_01915 0.77 -2.6 371,295 + MCAODC_01915 0.85 -2.5 371,402 - -3.8 371,611 + gmrSD MCAODC_01920 0.38 -1.1 371,665 - gmrSD MCAODC_01920 0.56 -1.1 371,693 - gmrSD MCAODC_01920 0.66 -0.7 371,771 - +1.1 371,771 - +0.9 371,793 + -2.0 371,851 + +0.8 371,944 - +2.1 371,945 + -2.7 371,954 + +1.3 371,955 - +0.4 371,955 - +0.7 371,972 + +1.5 371,976 + +1.2 371,976 + -3.0 372,015 + -4.2 372,025 - +1.6 372,028 + -2.9 372,029 - +0.9 372,048 + +2.1 372,048 + -1.4 372,049 - +2.2 372,061 - +0.5 372,082 + +0.0 372,083 - +0.3 372,083 - -2.0 372,194 + +0.6 372,194 + -4.5 372,259 - +0.5 372,259 - -0.0 372,345 + hsdR MCAODC_01925 0.11 +0.5 372,345 + hsdR MCAODC_01925 0.11 +1.2 372,346 - hsdR MCAODC_01925 0.12 -1.6 372,399 - hsdR MCAODC_01925 0.14 +0.5 372,399 - hsdR MCAODC_01925 0.14 -1.2 372,448 + hsdR MCAODC_01925 0.16 -0.1 372,448 + hsdR MCAODC_01925 0.16 +1.1 372,511 - hsdR MCAODC_01925 0.18 -4.0 372,546 + hsdR MCAODC_01925 0.20 -1.1 372,546 + hsdR MCAODC_01925 0.20 -1.8 372,547 - hsdR MCAODC_01925 0.20 -0.6 372,580 - hsdR MCAODC_01925 0.21 -1.1 372,580 - hsdR MCAODC_01925 0.21 +0.0 372,580 - hsdR MCAODC_01925 0.21 -2.1 372,580 - hsdR MCAODC_01925 0.21 -0.2 372,675 + hsdR MCAODC_01925 0.25 +0.2 372,675 + hsdR MCAODC_01925 0.25 +0.1 372,675 + hsdR MCAODC_01925 0.25 -1.4 372,675 + hsdR MCAODC_01925 0.25 -0.7 372,675 + hsdR MCAODC_01925 0.25 +1.0 372,676 - hsdR MCAODC_01925 0.25 -1.6 372,753 - hsdR MCAODC_01925 0.28 +1.9 372,841 - hsdR MCAODC_01925 0.32 +0.9 372,862 - hsdR MCAODC_01925 0.33 -0.9 372,870 - hsdR MCAODC_01925 0.33 +0.9 372,870 - hsdR MCAODC_01925 0.33 +0.7 372,871 + hsdR MCAODC_01925 0.33 -0.2 372,872 - hsdR MCAODC_01925 0.33 -0.1 372,872 - hsdR MCAODC_01925 0.33 -2.2 372,872 - hsdR MCAODC_01925 0.33 -1.6 373,005 - hsdR MCAODC_01925 0.39 -0.8 373,089 + hsdR MCAODC_01925 0.42 +1.5 373,095 + hsdR MCAODC_01925 0.42 -0.8 373,096 - hsdR MCAODC_01925 0.42 +1.0 373,096 - hsdR MCAODC_01925 0.42 +0.3 373,096 - hsdR MCAODC_01925 0.42 +0.4 373,103 - hsdR MCAODC_01925 0.43 -0.5 373,138 - hsdR MCAODC_01925 0.44 -0.9 373,138 - hsdR MCAODC_01925 0.44 -0.2 373,139 + hsdR MCAODC_01925 0.44 +4.2 373,139 + hsdR MCAODC_01925 0.44 -2.2 373,139 + hsdR MCAODC_01925 0.44 -0.5 373,140 - hsdR MCAODC_01925 0.44 +0.2 373,140 - hsdR MCAODC_01925 0.44 +0.7 373,140 - hsdR MCAODC_01925 0.44 +0.0 373,157 + hsdR MCAODC_01925 0.45 +0.4 373,158 - hsdR MCAODC_01925 0.45 -3.7 373,207 + hsdR MCAODC_01925 0.47 -4.3 373,208 - hsdR MCAODC_01925 0.47 -0.3 373,232 + hsdR MCAODC_01925 0.48 -2.3 373,232 + hsdR MCAODC_01925 0.48 -0.4 373,232 + hsdR MCAODC_01925 0.48 +0.5 373,233 - hsdR MCAODC_01925 0.48 +0.9 373,233 - hsdR MCAODC_01925 0.48 +3.0 373,233 - hsdR MCAODC_01925 0.48 +0.4 373,236 + hsdR MCAODC_01925 0.48 +1.3 373,236 + hsdR MCAODC_01925 0.48 -1.1 373,236 + hsdR MCAODC_01925 0.48 +1.2 373,236 + hsdR MCAODC_01925 0.48 -1.3 373,236 + hsdR MCAODC_01925 0.48 +0.3 373,236 + hsdR MCAODC_01925 0.48 -3.0 373,237 - hsdR MCAODC_01925 0.48 +0.6 373,237 - hsdR MCAODC_01925 0.48 +2.1 373,237 - hsdR MCAODC_01925 0.48 -2.3 373,237 - hsdR MCAODC_01925 0.48 +0.9 373,237 - hsdR MCAODC_01925 0.48 -1.3 373,239 - hsdR MCAODC_01925 0.48 -3.6 373,239 - hsdR MCAODC_01925 0.48 +0.8 373,268 - hsdR MCAODC_01925 0.49 -2.2 373,323 - hsdR MCAODC_01925 0.52 -0.0 373,380 - hsdR MCAODC_01925 0.54 -1.1 373,434 + hsdR MCAODC_01925 0.56 +0.8 373,435 - hsdR MCAODC_01925 0.56 +0.2 373,435 - hsdR MCAODC_01925 0.56 +1.2 373,435 - hsdR MCAODC_01925 0.56 +0.6 373,435 - hsdR MCAODC_01925 0.56 +1.7 373,509 + hsdR MCAODC_01925 0.59 +0.4 373,559 + hsdR MCAODC_01925 0.61 -0.2 373,560 - hsdR MCAODC_01925 0.61 +0.3 373,560 - hsdR MCAODC_01925 0.61 -0.2 373,560 - hsdR MCAODC_01925 0.61 -1.0 373,577 - hsdR MCAODC_01925 0.62 +1.8 373,635 - hsdR MCAODC_01925 0.64 +0.9 373,671 - hsdR MCAODC_01925 0.66 +0.6 373,831 + hsdR MCAODC_01925 0.73 +0.3 373,878 - hsdR MCAODC_01925 0.74 -0.8 373,945 + hsdR MCAODC_01925 0.77 +0.7 373,977 + hsdR MCAODC_01925 0.79 +0.5 373,977 + hsdR MCAODC_01925 0.79 -1.5 373,978 - hsdR MCAODC_01925 0.79 +1.8 373,980 + hsdR MCAODC_01925 0.79 -0.1 374,023 - hsdR MCAODC_01925 0.80 +1.9 374,023 - hsdR MCAODC_01925 0.80 +0.6 374,146 + hsdR MCAODC_01925 0.85 -0.2 374,165 + hsdR MCAODC_01925 0.86 -2.0 374,200 + hsdR MCAODC_01925 0.88 +0.7 374,200 + hsdR MCAODC_01925 0.88 -2.5 374,200 + hsdR MCAODC_01925 0.88 -1.2 374,201 - hsdR MCAODC_01925 0.88 +1.2 374,205 + hsdR MCAODC_01925 0.88 -0.2 374,205 + hsdR MCAODC_01925 0.88 -0.2 374,205 + hsdR MCAODC_01925 0.88 -3.4 374,206 - hsdR MCAODC_01925 0.88 -2.5 374,206 - hsdR MCAODC_01925 0.88 +1.6 374,206 - hsdR MCAODC_01925 0.88 +1.6 374,206 - hsdR MCAODC_01925 0.88 +0.3 374,206 - hsdR MCAODC_01925 0.88 -1.5 374,262 + -2.9 374,263 - -1.5 374,274 + -0.2 374,274 + +0.3 374,320 - -0.5 374,351 + +0.5 374,406 - +1.4 374,406 - -0.8 374,408 + +1.8 374,408 + +3.0 374,409 - +0.9 374,438 + +0.3 374,439 - -0.3 374,472 + -1.1 374,473 - +0.8 374,473 - -1.3 374,560 - +0.3 374,571 - -0.8 374,594 - -0.5 374,600 + +0.4 374,600 + -1.3 374,600 + +0.3 374,601 - +0.3 374,601 - +0.8 374,601 - +0.1 374,601 - +0.8 374,603 + +0.8 374,717 + hsdM MCAODC_01930 0.10 -0.2 374,717 + hsdM MCAODC_01930 0.10 +0.6 374,717 + hsdM MCAODC_01930 0.10 +0.1 374,718 - hsdM MCAODC_01930 0.10 +1.2 374,721 + hsdM MCAODC_01930 0.11 -3.0 374,745 + hsdM MCAODC_01930 0.12 -0.7 374,746 - hsdM MCAODC_01930 0.12 -3.6 374,746 - hsdM MCAODC_01930 0.12 +0.7 374,746 - hsdM MCAODC_01930 0.12 +1.0 374,749 + hsdM MCAODC_01930 0.13 +0.6 374,904 + hsdM MCAODC_01930 0.23 -0.7 374,904 + hsdM MCAODC_01930 0.23 +0.7 374,904 + hsdM MCAODC_01930 0.23 -0.3 374,904 + hsdM MCAODC_01930 0.23 +1.3 374,905 - hsdM MCAODC_01930 0.23 +1.8 374,905 - hsdM MCAODC_01930 0.23 -2.6 374,905 - hsdM MCAODC_01930 0.23 +1.1 374,905 - hsdM MCAODC_01930 0.23 +1.2 374,905 - hsdM MCAODC_01930 0.23 -3.4 374,906 + hsdM MCAODC_01930 0.23 +0.8 374,906 + hsdM MCAODC_01930 0.23 +0.4 374,907 - hsdM MCAODC_01930 0.23 -3.5 374,911 - hsdM MCAODC_01930 0.24 +0.3 374,911 - hsdM MCAODC_01930 0.24 +1.2 374,911 - hsdM MCAODC_01930 0.24 +0.7 374,929 + hsdM MCAODC_01930 0.25 -0.2 374,930 - hsdM MCAODC_01930 0.25 +1.3 374,948 + hsdM MCAODC_01930 0.26 -2.2 374,949 - hsdM MCAODC_01930 0.26 +0.4 374,969 + hsdM MCAODC_01930 0.27 -1.4 375,003 - hsdM MCAODC_01930 0.30 +1.1 375,006 + hsdM MCAODC_01930 0.30 -0.5 375,006 + hsdM MCAODC_01930 0.30 +0.1 375,007 - hsdM MCAODC_01930 0.30 +0.8 375,058 - hsdM MCAODC_01930 0.34 +1.1 375,060 - hsdM MCAODC_01930 0.34 -2.6 375,083 + hsdM MCAODC_01930 0.35 +1.9 375,083 + hsdM MCAODC_01930 0.35 -1.1 375,122 + hsdM MCAODC_01930 0.38 -2.0 375,175 + hsdM MCAODC_01930 0.41 -1.0 375,176 - hsdM MCAODC_01930 0.42 -3.8 375,176 - hsdM MCAODC_01930 0.42 -4.8 375,176 - hsdM MCAODC_01930 0.42 +1.1 375,187 - hsdM MCAODC_01930 0.42 -2.9 375,278 + hsdM MCAODC_01930 0.49 +0.9 375,278 + hsdM MCAODC_01930 0.49 +0.1 375,279 - hsdM MCAODC_01930 0.49 +1.5 375,279 - hsdM MCAODC_01930 0.49 -0.7 375,279 - hsdM MCAODC_01930 0.49 +0.4 375,377 + hsdM MCAODC_01930 0.55 -0.7 375,488 - hsdM MCAODC_01930 0.63 +3.1 375,488 - hsdM MCAODC_01930 0.63 +0.4
Or see this region's nucleotide sequence