Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_01915 and gmrSD are separated by 8 nucleotides gmrSD and hsdR are separated by 277 nucleotides
MCAODC_01915: MCAODC_01915 - DUF262 domain-containing protein, at 370,137 to 371,495
_01915
MCAODC_01920: gmrSD - DUF262 domain-containing protein, at 371,504 to 371,788
gmrSD
MCAODC_01925: hsdR - DEAD/DEAH box helicase, at 372,066 to 374,498
hsdR
Position (kb) 371
372 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 370.706 kb on + strand, within MCAODC_01915 at 370.707 kb on - strand, within MCAODC_01915 at 370.707 kb on - strand, within MCAODC_01915 at 370.831 kb on - strand, within MCAODC_01915 at 370.879 kb on - strand, within MCAODC_01915 at 370.926 kb on - strand, within MCAODC_01915 at 370.932 kb on - strand, within MCAODC_01915 at 371.187 kb on + strand, within MCAODC_01915 at 371.295 kb on + strand, within MCAODC_01915 at 371.402 kb on - strand at 371.611 kb on + strand, within gmrSD at 371.665 kb on - strand, within gmrSD at 371.693 kb on - strand, within gmrSD at 371.771 kb on - strand at 371.771 kb on - strand at 371.793 kb on + strand at 371.851 kb on + strand at 371.944 kb on - strand at 371.945 kb on + strand at 371.954 kb on + strand at 371.955 kb on - strand at 371.955 kb on - strand at 371.972 kb on + strand at 371.976 kb on + strand at 371.976 kb on + strand at 372.015 kb on + strand at 372.025 kb on - strand at 372.028 kb on + strand at 372.029 kb on - strand at 372.048 kb on + strand at 372.048 kb on + strand at 372.049 kb on - strand at 372.061 kb on - strand at 372.082 kb on + strand at 372.083 kb on - strand at 372.083 kb on - strand at 372.194 kb on + strand at 372.194 kb on + strand at 372.259 kb on - strand at 372.259 kb on - strand at 372.345 kb on + strand, within hsdR at 372.345 kb on + strand, within hsdR at 372.346 kb on - strand, within hsdR at 372.399 kb on - strand, within hsdR at 372.399 kb on - strand, within hsdR at 372.448 kb on + strand, within hsdR at 372.448 kb on + strand, within hsdR at 372.511 kb on - strand, within hsdR at 372.546 kb on + strand, within hsdR at 372.546 kb on + strand, within hsdR at 372.547 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.580 kb on - strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.675 kb on + strand, within hsdR at 372.676 kb on - strand, within hsdR at 372.753 kb on - strand, within hsdR
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 370,706 + MCAODC_01915 0.42 -2.2 370,707 - MCAODC_01915 0.42 -0.7 370,707 - MCAODC_01915 0.42 +0.3 370,831 - MCAODC_01915 0.51 -0.4 370,879 - MCAODC_01915 0.55 -3.7 370,926 - MCAODC_01915 0.58 +0.1 370,932 - MCAODC_01915 0.58 +0.1 371,187 + MCAODC_01915 0.77 -2.6 371,295 + MCAODC_01915 0.85 -2.5 371,402 - -3.8 371,611 + gmrSD MCAODC_01920 0.38 -1.1 371,665 - gmrSD MCAODC_01920 0.56 -1.1 371,693 - gmrSD MCAODC_01920 0.66 -0.7 371,771 - +1.1 371,771 - +0.9 371,793 + -2.0 371,851 + +0.8 371,944 - +2.1 371,945 + -2.7 371,954 + +1.3 371,955 - +0.4 371,955 - +0.7 371,972 + +1.5 371,976 + +1.2 371,976 + -3.0 372,015 + -4.2 372,025 - +1.6 372,028 + -2.9 372,029 - +0.9 372,048 + +2.1 372,048 + -1.4 372,049 - +2.2 372,061 - +0.5 372,082 + +0.0 372,083 - +0.3 372,083 - -2.0 372,194 + +0.6 372,194 + -4.5 372,259 - +0.5 372,259 - -0.0 372,345 + hsdR MCAODC_01925 0.11 +0.5 372,345 + hsdR MCAODC_01925 0.11 +1.2 372,346 - hsdR MCAODC_01925 0.12 -1.6 372,399 - hsdR MCAODC_01925 0.14 +0.5 372,399 - hsdR MCAODC_01925 0.14 -1.2 372,448 + hsdR MCAODC_01925 0.16 -0.1 372,448 + hsdR MCAODC_01925 0.16 +1.1 372,511 - hsdR MCAODC_01925 0.18 -4.0 372,546 + hsdR MCAODC_01925 0.20 -1.1 372,546 + hsdR MCAODC_01925 0.20 -1.8 372,547 - hsdR MCAODC_01925 0.20 -0.6 372,580 - hsdR MCAODC_01925 0.21 -1.1 372,580 - hsdR MCAODC_01925 0.21 +0.0 372,580 - hsdR MCAODC_01925 0.21 -2.1 372,580 - hsdR MCAODC_01925 0.21 -0.2 372,675 + hsdR MCAODC_01925 0.25 +0.2 372,675 + hsdR MCAODC_01925 0.25 +0.1 372,675 + hsdR MCAODC_01925 0.25 -1.4 372,675 + hsdR MCAODC_01925 0.25 -0.7 372,675 + hsdR MCAODC_01925 0.25 +1.0 372,676 - hsdR MCAODC_01925 0.25 -1.6 372,753 - hsdR MCAODC_01925 0.28 +1.9
Or see this region's nucleotide sequence