Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt creC and creB overlap by 1 nucleotides creB and creA are separated by 12 nucleotides creA and robA are separated by 210 nucleotides
MCAODC_01650: creC - two-component system sensor histidine kinase CreC, at 320,722 to 322,146
creC
MCAODC_01655: creB - two-component system response regulator CreB, at 322,146 to 322,835
creB
MCAODC_01660: creA - protein CreA, at 322,848 to 323,321
creA
MCAODC_01665: robA - MDR efflux pump AcrAB transcriptional activator RobA, at 323,532 to 324,401
robA
Position (kb) 322
323 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 321.148 kb on + strand, within creC at 321.149 kb on - strand, within creC at 321.212 kb on - strand, within creC at 321.214 kb on + strand, within creC at 321.214 kb on + strand, within creC at 321.215 kb on - strand, within creC at 321.219 kb on + strand, within creC at 321.268 kb on - strand, within creC at 321.346 kb on + strand, within creC at 321.346 kb on + strand, within creC at 321.346 kb on + strand, within creC at 321.366 kb on - strand, within creC at 321.371 kb on + strand, within creC at 321.371 kb on + strand, within creC at 321.371 kb on + strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.372 kb on - strand, within creC at 321.381 kb on + strand, within creC at 321.381 kb on + strand, within creC at 321.381 kb on + strand, within creC at 321.382 kb on - strand, within creC at 321.382 kb on - strand, within creC at 321.383 kb on + strand, within creC at 321.384 kb on - strand, within creC at 321.411 kb on + strand, within creC at 321.412 kb on - strand, within creC at 321.477 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.701 kb on + strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.702 kb on - strand, within creC at 321.755 kb on + strand, within creC at 321.756 kb on - strand, within creC at 321.756 kb on - strand, within creC at 321.756 kb on - strand, within creC at 321.756 kb on - strand, within creC at 321.797 kb on + strand, within creC at 321.836 kb on - strand, within creC at 321.836 kb on - strand, within creC at 321.858 kb on + strand, within creC at 321.858 kb on + strand, within creC at 321.859 kb on - strand, within creC at 321.859 kb on - strand, within creC at 321.859 kb on - strand, within creC at 321.860 kb on + strand, within creC at 321.860 kb on + strand, within creC at 321.860 kb on + strand, within creC at 321.860 kb on + strand, within creC at 321.860 kb on + strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.861 kb on - strand, within creC at 321.869 kb on + strand, within creC at 321.869 kb on + strand, within creC at 321.869 kb on + strand, within creC at 321.869 kb on + strand, within creC at 321.889 kb on - strand, within creC at 321.903 kb on + strand, within creC at 321.925 kb on + strand, within creC at 321.933 kb on + strand, within creC at 321.933 kb on + strand, within creC at 322.074 kb on + strand at 322.115 kb on + strand at 322.165 kb on + strand at 322.166 kb on - strand at 322.184 kb on + strand at 322.184 kb on + strand at 322.185 kb on - strand at 322.188 kb on - strand at 322.238 kb on + strand, within creB at 322.264 kb on + strand, within creB at 322.264 kb on + strand, within creB at 322.265 kb on - strand, within creB at 322.265 kb on - strand, within creB at 322.265 kb on - strand, within creB at 322.363 kb on + strand, within creB at 322.437 kb on - strand, within creB at 322.496 kb on + strand, within creB at 322.534 kb on + strand, within creB at 322.534 kb on + strand, within creB at 322.534 kb on + strand, within creB at 322.535 kb on - strand, within creB at 322.535 kb on - strand, within creB at 322.602 kb on + strand, within creB at 322.602 kb on + strand, within creB at 322.602 kb on + strand, within creB at 322.603 kb on - strand, within creB at 322.630 kb on - strand, within creB at 322.713 kb on - strand, within creB at 322.774 kb on + strand at 322.775 kb on - strand at 322.775 kb on - strand at 322.835 kb on + strand at 322.835 kb on + strand at 322.835 kb on + strand at 322.835 kb on + strand at 322.850 kb on - strand at 322.880 kb on + strand at 322.880 kb on + strand at 322.905 kb on + strand, within creA at 322.905 kb on + strand, within creA at 322.906 kb on - strand, within creA at 322.930 kb on + strand, within creA at 322.957 kb on + strand, within creA at 323.013 kb on + strand, within creA at 323.013 kb on + strand, within creA at 323.014 kb on - strand, within creA at 323.014 kb on - strand, within creA at 323.014 kb on - strand, within creA at 323.014 kb on - strand, within creA at 323.039 kb on + strand, within creA at 323.100 kb on - strand, within creA at 323.127 kb on - strand, within creA at 323.130 kb on - strand, within creA at 323.130 kb on - strand, within creA at 323.155 kb on + strand, within creA at 323.155 kb on + strand, within creA at 323.155 kb on + strand, within creA at 323.155 kb on + strand, within creA at 323.156 kb on - strand, within creA at 323.228 kb on + strand, within creA at 323.229 kb on - strand, within creA at 323.229 kb on - strand, within creA at 323.232 kb on + strand, within creA at 323.232 kb on + strand, within creA at 323.233 kb on - strand, within creA at 323.283 kb on + strand at 323.284 kb on - strand at 323.315 kb on - strand at 323.340 kb on + strand at 323.356 kb on - strand at 323.368 kb on + strand at 323.373 kb on - strand at 323.430 kb on + strand at 323.431 kb on - strand at 323.459 kb on + strand at 323.459 kb on + strand at 323.488 kb on + strand at 323.488 kb on + strand at 323.489 kb on - strand at 323.526 kb on + strand at 323.549 kb on + strand at 323.629 kb on - strand, within robA at 323.644 kb on + strand, within robA at 323.645 kb on - strand, within robA at 323.657 kb on + strand, within robA at 323.678 kb on + strand, within robA at 323.679 kb on - strand, within robA at 323.688 kb on + strand, within robA at 323.688 kb on + strand, within robA at 323.691 kb on - strand, within robA at 323.770 kb on - strand, within robA at 323.796 kb on - strand, within robA
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 321,148 + creC MCAODC_01650 0.30 +0.3 321,149 - creC MCAODC_01650 0.30 -0.9 321,212 - creC MCAODC_01650 0.34 +1.6 321,214 + creC MCAODC_01650 0.35 +0.7 321,214 + creC MCAODC_01650 0.35 -1.6 321,215 - creC MCAODC_01650 0.35 +1.8 321,219 + creC MCAODC_01650 0.35 +1.6 321,268 - creC MCAODC_01650 0.38 +1.6 321,346 + creC MCAODC_01650 0.44 +1.1 321,346 + creC MCAODC_01650 0.44 -1.3 321,346 + creC MCAODC_01650 0.44 +1.2 321,366 - creC MCAODC_01650 0.45 +0.8 321,371 + creC MCAODC_01650 0.46 +1.5 321,371 + creC MCAODC_01650 0.46 +0.9 321,371 + creC MCAODC_01650 0.46 +0.5 321,372 - creC MCAODC_01650 0.46 +0.9 321,372 - creC MCAODC_01650 0.46 +0.7 321,372 - creC MCAODC_01650 0.46 -2.1 321,372 - creC MCAODC_01650 0.46 -0.4 321,372 - creC MCAODC_01650 0.46 -2.0 321,381 + creC MCAODC_01650 0.46 -0.7 321,381 + creC MCAODC_01650 0.46 +0.1 321,381 + creC MCAODC_01650 0.46 +3.2 321,382 - creC MCAODC_01650 0.46 -0.4 321,382 - creC MCAODC_01650 0.46 +0.8 321,383 + creC MCAODC_01650 0.46 +0.5 321,384 - creC MCAODC_01650 0.46 +0.2 321,411 + creC MCAODC_01650 0.48 -3.1 321,412 - creC MCAODC_01650 0.48 +1.4 321,477 + creC MCAODC_01650 0.53 +0.6 321,701 + creC MCAODC_01650 0.69 +0.5 321,701 + creC MCAODC_01650 0.69 -1.8 321,701 + creC MCAODC_01650 0.69 -0.4 321,701 + creC MCAODC_01650 0.69 -0.9 321,701 + creC MCAODC_01650 0.69 +0.7 321,701 + creC MCAODC_01650 0.69 +1.4 321,701 + creC MCAODC_01650 0.69 -2.0 321,701 + creC MCAODC_01650 0.69 +0.0 321,701 + creC MCAODC_01650 0.69 -0.5 321,701 + creC MCAODC_01650 0.69 -2.1 321,702 - creC MCAODC_01650 0.69 -4.7 321,702 - creC MCAODC_01650 0.69 -2.3 321,702 - creC MCAODC_01650 0.69 -1.8 321,702 - creC MCAODC_01650 0.69 +0.6 321,702 - creC MCAODC_01650 0.69 -4.3 321,702 - creC MCAODC_01650 0.69 +1.8 321,702 - creC MCAODC_01650 0.69 +1.2 321,702 - creC MCAODC_01650 0.69 -0.6 321,702 - creC MCAODC_01650 0.69 -1.8 321,755 + creC MCAODC_01650 0.72 -0.4 321,756 - creC MCAODC_01650 0.73 -0.2 321,756 - creC MCAODC_01650 0.73 +0.7 321,756 - creC MCAODC_01650 0.73 +1.7 321,756 - creC MCAODC_01650 0.73 +1.6 321,797 + creC MCAODC_01650 0.75 +0.7 321,836 - creC MCAODC_01650 0.78 +0.8 321,836 - creC MCAODC_01650 0.78 -0.2 321,858 + creC MCAODC_01650 0.80 +0.8 321,858 + creC MCAODC_01650 0.80 -0.6 321,859 - creC MCAODC_01650 0.80 +0.4 321,859 - creC MCAODC_01650 0.80 -0.2 321,859 - creC MCAODC_01650 0.80 +1.0 321,860 + creC MCAODC_01650 0.80 +0.2 321,860 + creC MCAODC_01650 0.80 -2.9 321,860 + creC MCAODC_01650 0.80 +0.7 321,860 + creC MCAODC_01650 0.80 +1.2 321,860 + creC MCAODC_01650 0.80 +2.2 321,861 - creC MCAODC_01650 0.80 +0.1 321,861 - creC MCAODC_01650 0.80 -3.1 321,861 - creC MCAODC_01650 0.80 +1.2 321,861 - creC MCAODC_01650 0.80 -2.0 321,861 - creC MCAODC_01650 0.80 +0.3 321,861 - creC MCAODC_01650 0.80 +2.0 321,861 - creC MCAODC_01650 0.80 -0.2 321,861 - creC MCAODC_01650 0.80 +3.4 321,861 - creC MCAODC_01650 0.80 -4.0 321,861 - creC MCAODC_01650 0.80 +0.0 321,861 - creC MCAODC_01650 0.80 -1.8 321,869 + creC MCAODC_01650 0.80 -3.6 321,869 + creC MCAODC_01650 0.80 -0.2 321,869 + creC MCAODC_01650 0.80 -0.3 321,869 + creC MCAODC_01650 0.80 -3.2 321,889 - creC MCAODC_01650 0.82 -2.0 321,903 + creC MCAODC_01650 0.83 +1.0 321,925 + creC MCAODC_01650 0.84 -1.0 321,933 + creC MCAODC_01650 0.85 -1.4 321,933 + creC MCAODC_01650 0.85 -1.3 322,074 + -0.2 322,115 + -2.4 322,165 + -0.4 322,166 - -3.3 322,184 + -0.4 322,184 + +0.9 322,185 - +1.4 322,188 - -0.7 322,238 + creB MCAODC_01655 0.13 -0.0 322,264 + creB MCAODC_01655 0.17 -4.1 322,264 + creB MCAODC_01655 0.17 +0.8 322,265 - creB MCAODC_01655 0.17 -0.0 322,265 - creB MCAODC_01655 0.17 +1.4 322,265 - creB MCAODC_01655 0.17 +0.4 322,363 + creB MCAODC_01655 0.31 -0.4 322,437 - creB MCAODC_01655 0.42 -1.7 322,496 + creB MCAODC_01655 0.51 +0.8 322,534 + creB MCAODC_01655 0.56 +0.9 322,534 + creB MCAODC_01655 0.56 -0.7 322,534 + creB MCAODC_01655 0.56 +1.5 322,535 - creB MCAODC_01655 0.56 +0.6 322,535 - creB MCAODC_01655 0.56 -0.3 322,602 + creB MCAODC_01655 0.66 -0.8 322,602 + creB MCAODC_01655 0.66 -1.3 322,602 + creB MCAODC_01655 0.66 -1.3 322,603 - creB MCAODC_01655 0.66 -0.0 322,630 - creB MCAODC_01655 0.70 -0.1 322,713 - creB MCAODC_01655 0.82 +1.0 322,774 + +1.7 322,775 - +0.1 322,775 - -4.5 322,835 + +0.1 322,835 + -1.0 322,835 + -2.7 322,835 + +1.4 322,850 - -2.7 322,880 + +0.2 322,880 + +0.7 322,905 + creA MCAODC_01660 0.12 +2.0 322,905 + creA MCAODC_01660 0.12 +0.1 322,906 - creA MCAODC_01660 0.12 +0.2 322,930 + creA MCAODC_01660 0.17 -0.6 322,957 + creA MCAODC_01660 0.23 -0.2 323,013 + creA MCAODC_01660 0.35 -2.6 323,013 + creA MCAODC_01660 0.35 -1.0 323,014 - creA MCAODC_01660 0.35 -0.9 323,014 - creA MCAODC_01660 0.35 +0.9 323,014 - creA MCAODC_01660 0.35 -4.0 323,014 - creA MCAODC_01660 0.35 +0.6 323,039 + creA MCAODC_01660 0.40 -0.6 323,100 - creA MCAODC_01660 0.53 +0.3 323,127 - creA MCAODC_01660 0.59 +0.3 323,130 - creA MCAODC_01660 0.59 +0.3 323,130 - creA MCAODC_01660 0.59 +2.7 323,155 + creA MCAODC_01660 0.65 +0.5 323,155 + creA MCAODC_01660 0.65 +0.4 323,155 + creA MCAODC_01660 0.65 +0.3 323,155 + creA MCAODC_01660 0.65 +0.2 323,156 - creA MCAODC_01660 0.65 -1.0 323,228 + creA MCAODC_01660 0.80 -1.5 323,229 - creA MCAODC_01660 0.80 -1.3 323,229 - creA MCAODC_01660 0.80 +0.5 323,232 + creA MCAODC_01660 0.81 -0.6 323,232 + creA MCAODC_01660 0.81 +0.5 323,233 - creA MCAODC_01660 0.81 -0.1 323,283 + +0.8 323,284 - +0.4 323,315 - +1.7 323,340 + -2.0 323,356 - -1.8 323,368 + -1.4 323,373 - +0.9 323,430 + +0.0 323,431 - +1.5 323,459 + -0.3 323,459 + -0.9 323,488 + +0.3 323,488 + +0.7 323,489 - -3.0 323,526 + -3.1 323,549 + -0.8 323,629 - robA MCAODC_01665 0.11 -0.1 323,644 + robA MCAODC_01665 0.13 +0.4 323,645 - robA MCAODC_01665 0.13 +0.9 323,657 + robA MCAODC_01665 0.14 +1.1 323,678 + robA MCAODC_01665 0.17 -0.9 323,679 - robA MCAODC_01665 0.17 -0.6 323,688 + robA MCAODC_01665 0.18 +1.1 323,688 + robA MCAODC_01665 0.18 +0.3 323,691 - robA MCAODC_01665 0.18 -1.0 323,770 - robA MCAODC_01665 0.27 -0.1 323,796 - robA MCAODC_01665 0.30 +0.4
Or see this region's nucleotide sequence