Strain Fitness in Escherichia coli ECRC101 around MCAODC_00875

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpcnB and folK overlap by 4 nucleotidesfolK and MCAODC_00880 are separated by 280 nucleotidesMCAODC_00880 and ecpD are separated by 86 nucleotides MCAODC_00870: pcnB - polynucleotide adenylyltransferase PcnB, at 153,795 to 155,159 pcnB MCAODC_00875: folK - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase, at 155,156 to 155,638 folK MCAODC_00880: MCAODC_00880 - fimbrial protein, at 155,919 to 156,515 _00880 MCAODC_00885: ecpD - fimbrial chaperone, at 156,602 to 157,327 ecpD Position (kb) 155 156Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 154.266 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.269 kb on + strand, within pcnBat 154.299 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.385 kb on + strand, within pcnBat 154.399 kb on + strand, within pcnBat 154.514 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.548 kb on + strand, within pcnBat 154.551 kb on - strand, within pcnBat 154.551 kb on - strand, within pcnBat 154.606 kb on - strand, within pcnBat 154.664 kb on + strand, within pcnBat 154.664 kb on + strand, within pcnBat 154.688 kb on + strand, within pcnBat 154.782 kb on + strand, within pcnBat 154.782 kb on + strand, within pcnBat 154.898 kb on + strand, within pcnBat 154.946 kb on + strand, within pcnBat 154.946 kb on + strand, within pcnBat 154.962 kb on + strand, within pcnBat 154.997 kb on + strand, within pcnBat 155.168 kb on + strandat 155.168 kb on + strandat 155.168 kb on + strandat 155.586 kb on + strand, within folKat 155.613 kb on + strandat 155.614 kb on - strandat 155.616 kb on + strandat 155.617 kb on - strandat 155.659 kb on - strandat 155.664 kb on - strandat 155.683 kb on - strandat 155.868 kb on - strandat 155.896 kb on + strandat 155.977 kb on + strandat 155.977 kb on + strandat 155.978 kb on - strandat 155.978 kb on - strandat 156.010 kb on + strand, within MCAODC_00880at 156.010 kb on + strand, within MCAODC_00880at 156.026 kb on + strand, within MCAODC_00880at 156.040 kb on + strand, within MCAODC_00880at 156.040 kb on + strand, within MCAODC_00880at 156.041 kb on - strand, within MCAODC_00880at 156.041 kb on - strand, within MCAODC_00880at 156.044 kb on + strand, within MCAODC_00880at 156.044 kb on + strand, within MCAODC_00880at 156.050 kb on + strand, within MCAODC_00880at 156.051 kb on - strand, within MCAODC_00880at 156.056 kb on + strand, within MCAODC_00880at 156.057 kb on - strand, within MCAODC_00880at 156.062 kb on + strand, within MCAODC_00880at 156.089 kb on + strand, within MCAODC_00880at 156.107 kb on + strand, within MCAODC_00880at 156.122 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.205 kb on + strand, within MCAODC_00880at 156.206 kb on - strand, within MCAODC_00880at 156.209 kb on + strand, within MCAODC_00880at 156.210 kb on - strand, within MCAODC_00880at 156.210 kb on - strand, within MCAODC_00880at 156.251 kb on + strand, within MCAODC_00880at 156.257 kb on + strand, within MCAODC_00880at 156.258 kb on - strand, within MCAODC_00880at 156.258 kb on - strand, within MCAODC_00880at 156.278 kb on + strand, within MCAODC_00880at 156.278 kb on + strand, within MCAODC_00880at 156.279 kb on - strand, within MCAODC_00880at 156.314 kb on + strand, within MCAODC_00880at 156.314 kb on + strand, within MCAODC_00880at 156.425 kb on + strand, within MCAODC_00880at 156.435 kb on + strand, within MCAODC_00880at 156.435 kb on + strand, within MCAODC_00880at 156.436 kb on - strand, within MCAODC_00880at 156.478 kb on + strandat 156.486 kb on - strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.507 kb on + strandat 156.508 kb on - strandat 156.513 kb on + strandat 156.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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154,266 + pcnB MCAODC_00870 0.35 -1.5
154,269 + pcnB MCAODC_00870 0.35 +1.0
154,269 + pcnB MCAODC_00870 0.35 -2.4
154,269 + pcnB MCAODC_00870 0.35 -2.8
154,299 + pcnB MCAODC_00870 0.37 -1.8
154,385 + pcnB MCAODC_00870 0.43 +2.3
154,385 + pcnB MCAODC_00870 0.43 -3.8
154,385 + pcnB MCAODC_00870 0.43 -3.5
154,385 + pcnB MCAODC_00870 0.43 -1.7
154,385 + pcnB MCAODC_00870 0.43 -1.1
154,399 + pcnB MCAODC_00870 0.44 -2.0
154,514 + pcnB MCAODC_00870 0.53 -0.3
154,548 + pcnB MCAODC_00870 0.55 -0.8
154,548 + pcnB MCAODC_00870 0.55 +0.7
154,548 + pcnB MCAODC_00870 0.55 -2.1
154,551 - pcnB MCAODC_00870 0.55 -1.1
154,551 - pcnB MCAODC_00870 0.55 -1.0
154,606 - pcnB MCAODC_00870 0.59 -0.8
154,664 + pcnB MCAODC_00870 0.64 +0.4
154,664 + pcnB MCAODC_00870 0.64 -0.5
154,688 + pcnB MCAODC_00870 0.65 +0.9
154,782 + pcnB MCAODC_00870 0.72 -0.4
154,782 + pcnB MCAODC_00870 0.72 -0.0
154,898 + pcnB MCAODC_00870 0.81 +2.6
154,946 + pcnB MCAODC_00870 0.84 +0.2
154,946 + pcnB MCAODC_00870 0.84 -0.5
154,962 + pcnB MCAODC_00870 0.85 -1.6
154,997 + pcnB MCAODC_00870 0.88 +0.5
155,168 + +0.5
155,168 + -0.3
155,168 + -0.4
155,586 + folK MCAODC_00875 0.89 +0.7
155,613 + -2.3
155,614 - +0.8
155,616 + +0.3
155,617 - -0.2
155,659 - +1.3
155,664 - +0.8
155,683 - -0.7
155,868 - -0.7
155,896 + -3.5
155,977 + +0.9
155,977 + -1.0
155,978 - +0.2
155,978 - +1.6
156,010 + MCAODC_00880 0.15 +0.6
156,010 + MCAODC_00880 0.15 +0.5
156,026 + MCAODC_00880 0.18 +0.3
156,040 + MCAODC_00880 0.20 -0.3
156,040 + MCAODC_00880 0.20 +0.9
156,041 - MCAODC_00880 0.20 -2.9
156,041 - MCAODC_00880 0.20 -0.8
156,044 + MCAODC_00880 0.21 -1.8
156,044 + MCAODC_00880 0.21 +1.8
156,050 + MCAODC_00880 0.22 +0.2
156,051 - MCAODC_00880 0.22 -0.7
156,056 + MCAODC_00880 0.23 -2.1
156,057 - MCAODC_00880 0.23 -0.0
156,062 + MCAODC_00880 0.24 -3.2
156,089 + MCAODC_00880 0.28 +0.9
156,107 + MCAODC_00880 0.31 -1.7
156,122 + MCAODC_00880 0.34 +0.0
156,205 + MCAODC_00880 0.48 -3.2
156,205 + MCAODC_00880 0.48 +0.6
156,205 + MCAODC_00880 0.48 -1.8
156,205 + MCAODC_00880 0.48 -2.9
156,206 - MCAODC_00880 0.48 +1.2
156,209 + MCAODC_00880 0.49 -0.4
156,210 - MCAODC_00880 0.49 -0.0
156,210 - MCAODC_00880 0.49 -1.5
156,251 + MCAODC_00880 0.56 +0.5
156,257 + MCAODC_00880 0.57 -0.8
156,258 - MCAODC_00880 0.57 -3.3
156,258 - MCAODC_00880 0.57 +1.1
156,278 + MCAODC_00880 0.60 +0.5
156,278 + MCAODC_00880 0.60 -0.7
156,279 - MCAODC_00880 0.60 -5.0
156,314 + MCAODC_00880 0.66 +1.5
156,314 + MCAODC_00880 0.66 -2.8
156,425 + MCAODC_00880 0.85 +0.1
156,435 + MCAODC_00880 0.86 +0.7
156,435 + MCAODC_00880 0.86 +0.7
156,436 - MCAODC_00880 0.87 -3.9
156,478 + +0.5
156,486 - -2.3
156,507 + -3.5
156,507 + +1.2
156,507 + -0.2
156,507 + -1.5
156,508 - -2.3
156,513 + -1.4
156,601 + +1.1

Or see this region's nucleotide sequence