Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05940

Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
1,371,662	+		LRK53_RS05935	0.43	-1.1
1,371,662	+		LRK53_RS05935	0.43	-0.8
1,371,662	+		LRK53_RS05935	0.43	-1.1
1,371,662	+		LRK53_RS05935	0.43	+0.0
1,371,663	-		LRK53_RS05935	0.43	-1.5
1,371,663	-		LRK53_RS05935	0.43	-0.6
1,371,663	-		LRK53_RS05935	0.43	-0.5
1,371,663	-		LRK53_RS05935	0.43	-0.3
1,371,663	-		LRK53_RS05935	0.43	-1.5
1,371,784	+		LRK53_RS05935	0.53	-0.3
1,371,784	+		LRK53_RS05935	0.53	-1.7
1,371,784	+		LRK53_RS05935	0.53	+0.3
1,371,784	+		LRK53_RS05935	0.53	+1.1
1,371,784	+		LRK53_RS05935	0.53	-0.5
1,371,784	+		LRK53_RS05935	0.53	+0.9
1,371,784	+		LRK53_RS05935	0.53	-1.3
1,371,784	+		LRK53_RS05935	0.53	-0.9
1,371,785	-		LRK53_RS05935	0.53	+1.7
1,371,785	-		LRK53_RS05935	0.53	-2.4
1,371,785	-		LRK53_RS05935	0.53	-2.0
1,371,785	-		LRK53_RS05935	0.53	-0.1
1,371,785	-		LRK53_RS05935	0.53	-1.5
1,371,785	-		LRK53_RS05935	0.53	+2.7
1,371,785	-		LRK53_RS05935	0.53	-0.0
1,371,785	-		LRK53_RS05935	0.53	-0.2
1,371,785	-		LRK53_RS05935	0.53	-1.8
1,371,785	-		LRK53_RS05935	0.53	+0.6
1,371,866	+		LRK53_RS05935	0.59	-2.0
1,371,866	+		LRK53_RS05935	0.59	-0.1
1,371,866	+		LRK53_RS05935	0.59	-1.2
1,371,866	+		LRK53_RS05935	0.59	-1.5
1,371,866	+		LRK53_RS05935	0.59	-2.2
1,371,866	+		LRK53_RS05935	0.59	-1.1
1,371,866	+		LRK53_RS05935	0.59	-1.3
1,371,867	-		LRK53_RS05935	0.59	-0.2
1,371,867	-		LRK53_RS05935	0.59	-1.0
1,371,867	-		LRK53_RS05935	0.59	-1.1
1,371,935	+		LRK53_RS05935	0.64	-0.7
1,371,935	+		LRK53_RS05935	0.64	+0.3
1,371,935	+		LRK53_RS05935	0.64	-0.6
1,371,935	+		LRK53_RS05935	0.64	+0.3
1,371,935	+		LRK53_RS05935	0.64	+1.3
1,371,935	+		LRK53_RS05935	0.64	+1.8
1,371,935	+		LRK53_RS05935	0.64	-1.4
1,371,935	+		LRK53_RS05935	0.64	+0.1
1,371,935	+		LRK53_RS05935	0.64	-0.5
1,371,935	+		LRK53_RS05935	0.64	+0.1
1,371,936	-		LRK53_RS05935	0.65	+0.8
1,371,936	-		LRK53_RS05935	0.65	-0.0
1,371,936	-		LRK53_RS05935	0.65	-1.0
1,371,936	-		LRK53_RS05935	0.65	-1.8
1,371,936	-		LRK53_RS05935	0.65	-0.5
1,371,936	-		LRK53_RS05935	0.65	-2.7
1,371,936	-		LRK53_RS05935	0.65	+0.1
1,371,936	-		LRK53_RS05935	0.65	-0.6
1,371,936	-		LRK53_RS05935	0.65	-1.4
1,372,304	+				-1.6
1,372,304	+				-0.7
1,372,304	+				-0.9
1,372,304	+				-0.6
1,372,305	-				+1.6
1,372,305	-				-1.3
1,372,305	-				-1.1
1,372,305	-				+0.8
1,372,305	-				+1.6
1,372,305	-				+0.0
1,372,305	-				+0.3
1,372,305	-				-1.4
1,372,305	-				-2.0
1,372,305	-				-0.4
1,372,305	-				-1.1
1,372,445	+				+2.5
1,372,445	+				-0.4
1,372,445	+				+1.5
1,372,445	+				-1.8
1,372,445	+				+0.7
1,372,445	+				+1.6
1,372,445	+				-0.2
1,372,445	+				-1.5
1,372,445	+				-1.2
1,372,445	+				+2.7
1,372,445	+				-1.0
1,372,445	+				-1.3
1,372,445	+				-2.6
1,372,445	+				-2.8
1,372,445	+				+0.0
1,372,445	+				+0.9
1,372,445	+				+0.9
1,372,445	+				-1.1
1,372,446	-				+0.9
1,372,446	-				-0.1
1,372,446	-				-1.0
1,372,446	-				-0.4
1,372,446	-				-0.8
1,372,446	-				-0.7
1,372,446	-				-2.0
1,372,446	-				-0.3
1,372,446	-				-1.3
1,372,446	-				-0.6
1,372,446	-				-1.4
1,372,446	-				+1.1
1,372,446	-				-1.7
1,372,446	-				+0.3
1,372,446	-				-0.9
1,372,446	-				+0.7
1,372,446	-				-0.3
1,372,446	-				-0.4
1,372,446	-				-0.7
1,372,446	-				-1.9
1,372,452	+				+1.4
1,372,459	+				-0.5
1,372,459	+				+0.0
1,372,459	+				-2.4
1,372,459	+				+0.7
1,372,459	+				-1.4
1,372,459	+				-1.6
1,372,459	+				+0.6
1,372,459	+				+2.5
1,372,459	+				-0.0
1,372,459	+				-0.9
1,372,459	+				-0.4
1,372,459	+				+1.6
1,372,459	+				-1.4
1,372,459	+				+0.9
1,372,459	+				-2.0
1,372,460	-				-0.5
1,372,460	-				-0.5
1,372,460	-				-0.1
1,372,460	-				-0.0
1,372,460	-				+0.9
1,372,460	-				-0.9
1,372,460	-				-1.9
1,372,460	-				-1.7
1,372,460	-				-0.7
1,372,460	-				-0.0
1,372,460	-				-0.8
1,372,460	-				-0.1
1,372,460	-				-1.3
1,372,460	-				-0.6
1,372,460	-				-0.2
1,372,460	-				+0.0
1,372,460	-				-1.5
1,372,460	-				+0.3
1,372,460	-				+0.4
1,372,460	-				+1.3
1,372,710	+		LRK53_RS05940	0.10	-0.6
1,372,710	+		LRK53_RS05940	0.10	+1.6
1,372,710	+		LRK53_RS05940	0.10	+1.7
1,372,710	+		LRK53_RS05940	0.10	-1.0
1,372,710	+		LRK53_RS05940	0.10	-0.6
1,372,710	+		LRK53_RS05940	0.10	-0.1
1,372,711	-		LRK53_RS05940	0.10	-1.0
1,372,711	-		LRK53_RS05940	0.10	-1.4
1,372,711	-		LRK53_RS05940	0.10	+0.0
1,372,711	-		LRK53_RS05940	0.10	-1.2
1,372,711	-		LRK53_RS05940	0.10	-0.9
1,372,711	-		LRK53_RS05940	0.10	-0.1
1,372,711	-		LRK53_RS05940	0.10	+0.9
1,372,711	-		LRK53_RS05940	0.10	-0.7
1,372,711	-		LRK53_RS05940	0.10	+1.6
1,372,711	-		LRK53_RS05940	0.10	+0.6
1,372,711	-		LRK53_RS05940	0.10	-1.8
1,372,711	-		LRK53_RS05940	0.10	+0.5
1,372,731	+		LRK53_RS05940	0.12	-0.6
1,372,731	+		LRK53_RS05940	0.12	-1.4
1,372,731	+		LRK53_RS05940	0.12	+0.3
1,372,731	+		LRK53_RS05940	0.12	-0.7
1,372,732	-		LRK53_RS05940	0.12	-1.3
1,372,732	-		LRK53_RS05940	0.12	-1.2
1,372,732	-		LRK53_RS05940	0.12	-1.7
1,372,732	-		LRK53_RS05940	0.12	+0.3
1,372,732	-		LRK53_RS05940	0.12	-0.5
1,372,732	-		LRK53_RS05940	0.12	-2.1
1,372,732	-		LRK53_RS05940	0.12	+0.9
1,372,767	+		LRK53_RS05940	0.14	+0.1
1,372,767	+		LRK53_RS05940	0.14	-1.4
1,372,767	+		LRK53_RS05940	0.14	+0.1
1,372,767	+		LRK53_RS05940	0.14	-0.1
1,372,767	+		LRK53_RS05940	0.14	-1.2
1,372,767	+		LRK53_RS05940	0.14	-0.3
1,372,768	-		LRK53_RS05940	0.14	+0.3
1,372,768	-		LRK53_RS05940	0.14	+0.8
1,372,768	-		LRK53_RS05940	0.14	-0.7
1,372,768	-		LRK53_RS05940	0.14	+1.1
1,372,768	-		LRK53_RS05940	0.14	-2.6
1,372,768	-		LRK53_RS05940	0.14	-0.6
1,372,768	-		LRK53_RS05940	0.14	-0.6
1,372,914	+		LRK53_RS05940	0.22	+0.8
1,372,914	+		LRK53_RS05940	0.22	-2.0
1,372,914	+		LRK53_RS05940	0.22	+0.0
1,372,915	-		LRK53_RS05940	0.22	+0.4
1,372,915	-		LRK53_RS05940	0.22	-1.1
1,372,915	-		LRK53_RS05940	0.22	-2.2
1,373,185	+		LRK53_RS05940	0.38	-2.0
1,373,185	+		LRK53_RS05940	0.38	-0.4
1,373,185	+		LRK53_RS05940	0.38	-1.0
1,373,186	-		LRK53_RS05940	0.38	-2.2
1,373,186	-		LRK53_RS05940	0.38	-2.5
1,373,186	-		LRK53_RS05940	0.38	+0.3
1,373,186	-		LRK53_RS05940	0.38	-1.9
1,373,186	-		LRK53_RS05940	0.38	-0.6
1,373,223	+		LRK53_RS05940	0.40	-0.3
1,373,223	+		LRK53_RS05940	0.40	+0.1
1,373,223	+		LRK53_RS05940	0.40	+0.4
1,373,223	+		LRK53_RS05940	0.40	-2.0
1,373,224	-		LRK53_RS05940	0.40	-1.0
1,373,224	-		LRK53_RS05940	0.40	+0.7
1,373,224	-		LRK53_RS05940	0.40	-1.6
1,373,278	-		LRK53_RS05940	0.43	-1.1
1,373,278	-		LRK53_RS05940	0.43	-1.1
1,373,301	+		LRK53_RS05940	0.45	-0.5
1,373,301	+		LRK53_RS05940	0.45	+0.8
1,373,302	-		LRK53_RS05940	0.45	-0.2
1,373,302	-		LRK53_RS05940	0.45	+0.4
1,373,325	+		LRK53_RS05940	0.46	-0.5
1,373,326	-		LRK53_RS05940	0.46	+3.9
1,373,803	+		LRK53_RS05940	0.74	-1.3
1,373,803	+		LRK53_RS05940	0.74	+0.1
1,373,803	+		LRK53_RS05940	0.74	-0.3
1,373,803	+		LRK53_RS05940	0.74	-2.0
1,373,804	-		LRK53_RS05940	0.74	+0.7
1,373,804	-		LRK53_RS05940	0.74	+0.2
1,373,804	-		LRK53_RS05940	0.74	-1.2
1,373,804	-		LRK53_RS05940	0.74	-1.0
1,373,804	-		LRK53_RS05940	0.74	+0.6
1,373,804	-		LRK53_RS05940	0.74	-0.8
1,373,804	-		LRK53_RS05940	0.74	-0.9
1,373,804	-		LRK53_RS05940	0.74	-0.2
1,373,804	-		LRK53_RS05940	0.74	-0.8
1,373,804	-		LRK53_RS05940	0.74	+1.0
1,373,804	-		LRK53_RS05940	0.74	-1.0
1,373,804	-		LRK53_RS05940	0.74	-0.3
1,373,804	-		LRK53_RS05940	0.74	-0.9
1,373,804	-		LRK53_RS05940	0.74	-0.1
1,374,029	+		LRK53_RS05940	0.87	-0.3
1,374,029	+		LRK53_RS05940	0.87	-1.0
1,374,029	+		LRK53_RS05940	0.87	-0.4
1,374,030	-		LRK53_RS05940	0.87	-0.5
1,374,030	-		LRK53_RS05940	0.87	+1.4
1,374,256	+				-1.7
1,374,256	+				-0.1
1,374,256	+				+0.7
1,374,257	-				+0.4
1,374,257	-				-0.1
1,374,257	-				-0.7
1,374,257	-				-0.6
1,374,257	-				+1.4
1,374,270	+				-2.2
1,374,270	+				-1.8
1,374,270	+				-1.4
1,374,270	+				-1.5
1,374,271	-				-1.3
1,374,271	-				-0.7
1,374,271	-				-0.4
1,374,279	+				-0.2
1,374,279	+				+0.6
1,374,279	+				-1.3
1,374,279	+				+0.6
1,374,279	+				+1.0
1,374,279	+				-1.1
1,374,279	+				-3.0
1,374,279	+				-2.1
1,374,279	+				-0.7
1,374,279	+				-0.4
1,374,279	+				-0.9
1,374,279	+				-0.3
1,374,280	-				-1.7
1,374,280	-				-0.4
1,374,280	-				+0.6
1,374,280	-				+0.1
1,374,280	-				-0.7
1,374,280	-				-1.3
1,374,280	-				-0.8
1,374,293	+				+0.3
1,374,293	+				-1.3
1,374,294	-				-2.4
1,374,294	-				-0.8
1,374,387	+				-0.7
1,374,387	+				-0.0
1,374,387	+				+2.1
1,374,388	-				-0.4
1,374,388	-				-2.7
1,374,388	-				-1.3
1,374,388	-				+0.3
1,374,388	-				+1.0
1,374,388	-				-1.0
1,374,535	+				+1.2
1,374,535	+				-1.6
1,374,659	+				-0.1
1,374,660	-				-0.4
1,374,711	+				+1.1
1,374,711	+				-1.7
1,374,711	+				-1.0
1,374,711	+				-0.1
1,374,711	+				-1.2
1,374,711	+				-0.2
1,374,711	+				-0.3
1,374,712	-				-0.6
1,374,712	-				+0.3
1,374,712	-				-2.0
1,374,712	-				-0.9
1,374,712	-				-1.3
1,374,712	-				+0.8
1,374,712	-				-1.3
1,374,712	-				-2.6
1,374,712	-				+1.5
1,374,851	+		LRK53_RS05945	0.48	-0.4
1,374,852	-		LRK53_RS05945	0.49	-1.8
1,375,006	+				-1.1
1,375,006	+				-1.1
1,375,006	+				-1.6
1,375,006	+				-0.6
1,375,006	+				-0.3
1,375,006	+				-0.2
1,375,006	+				+0.2
1,375,006	+				+0.9
1,375,006	+				+0.2
1,375,006	+				-2.5
1,375,007	-				+1.6
1,375,007	-				-0.6
1,375,007	-				-1.0
1,375,007	-				+0.7
1,375,007	-				-0.6
1,375,007	-				-0.9
1,375,007	-				-2.0
1,375,007	-				-0.3
1,375,007	-				-0.1
1,375,007	-				+0.3
1,375,007	-				+1.4
1,375,007	-				-1.0
1,375,007	-				-1.1
1,375,135	+		LRK53_RS05950	0.41	-2.1
1,375,135	+		LRK53_RS05950	0.41	-1.1
1,375,135	+		LRK53_RS05950	0.41	-0.0
1,375,135	+		LRK53_RS05950	0.41	-0.0
1,375,135	+		LRK53_RS05950	0.41	-0.8
1,375,135	+		LRK53_RS05950	0.41	-1.5
1,375,135	+		LRK53_RS05950	0.41	+1.9
1,375,135	+		LRK53_RS05950	0.41	+0.5
1,375,135	+		LRK53_RS05950	0.41	-0.6
1,375,135	+		LRK53_RS05950	0.41	-0.6
1,375,135	+		LRK53_RS05950	0.41	-1.4
1,375,136	-		LRK53_RS05950	0.41	-1.8
1,375,136	-		LRK53_RS05950	0.41	-0.7
1,375,136	-		LRK53_RS05950	0.41	-1.1
1,375,136	-		LRK53_RS05950	0.41	-0.3
1,375,136	-		LRK53_RS05950	0.41	-1.5
1,375,240	+		LRK53_RS05950	0.67	-1.2
1,375,241	-		LRK53_RS05950	0.68	-0.8