Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS05710 and LRK53_RS05715 overlap by 4 nucleotides LRK53_RS05715 and LRK53_RS05720 are separated by 52 nucleotides LRK53_RS05720 and LRK53_RS05725 overlap by 4 nucleotides
LRK53_RS05710: LRK53_RS05710 - Holliday junction resolvase RuvX, at 1,325,552 to 1,326,001
_RS05710
LRK53_RS05715: LRK53_RS05715 - YqgE/AlgH family protein, at 1,325,998 to 1,326,567
_RS05715
LRK53_RS05720: LRK53_RS05720 - energy transducer TonB, at 1,326,620 to 1,327,489
_RS05720
LRK53_RS05725: LRK53_RS05725 - glutathione synthase, at 1,327,486 to 1,328,463
_RS05725
Position (kb) 1326
1327
1328 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1326.014 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.571 kb on + strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.572 kb on - strand at 1326.578 kb on + strand at 1326.578 kb on + strand at 1326.578 kb on + strand at 1326.578 kb on + strand at 1326.578 kb on + strand at 1326.579 kb on - strand at 1326.579 kb on - strand at 1326.579 kb on - strand at 1326.579 kb on - strand at 1326.874 kb on - strand, within LRK53_RS05720 at 1326.874 kb on - strand, within LRK53_RS05720 at 1326.874 kb on - strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.917 kb on + strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.918 kb on - strand, within LRK53_RS05720 at 1326.921 kb on + strand, within LRK53_RS05720 at 1326.921 kb on + strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.922 kb on - strand, within LRK53_RS05720 at 1326.930 kb on + strand, within LRK53_RS05720 at 1326.936 kb on + strand, within LRK53_RS05720 at 1326.936 kb on + strand, within LRK53_RS05720 at 1326.936 kb on + strand, within LRK53_RS05720 at 1326.937 kb on - strand, within LRK53_RS05720 at 1326.937 kb on - strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.960 kb on + strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1326.961 kb on - strand, within LRK53_RS05720 at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.548 kb on + strand at 1327.549 kb on - strand at 1327.549 kb on - strand at 1327.549 kb on - strand at 1327.549 kb on - strand at 1327.549 kb on - strand at 1327.549 kb on - strand at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.613 kb on + strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.614 kb on - strand, within LRK53_RS05725 at 1327.785 kb on - strand, within LRK53_RS05725 at 1327.785 kb on - strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.166 kb on + strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.167 kb on - strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.171 kb on + strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.172 kb on - strand, within LRK53_RS05725 at 1328.351 kb on + strand, within LRK53_RS05725 at 1328.351 kb on + strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725 at 1328.352 kb on - strand, within LRK53_RS05725
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM remove 1,326,014 + +0.8 1,326,571 + -0.6 1,326,571 + -0.1 1,326,571 + -1.2 1,326,571 + -0.7 1,326,571 + -1.4 1,326,571 + -0.5 1,326,571 + -0.5 1,326,571 + -0.2 1,326,571 + -2.4 1,326,571 + -3.1 1,326,571 + +0.6 1,326,571 + -2.3 1,326,571 + -1.2 1,326,571 + -1.9 1,326,571 + -1.5 1,326,571 + -1.0 1,326,571 + -0.7 1,326,571 + -0.8 1,326,571 + -0.3 1,326,571 + -1.8 1,326,571 + -1.5 1,326,571 + -0.8 1,326,571 + -1.1 1,326,571 + +0.6 1,326,571 + -1.7 1,326,571 + -0.2 1,326,571 + -0.2 1,326,571 + +0.8 1,326,571 + -2.5 1,326,571 + +0.4 1,326,571 + -0.6 1,326,572 - -0.8 1,326,572 - -1.6 1,326,572 - -0.1 1,326,572 - -0.2 1,326,572 - -1.6 1,326,572 - -1.7 1,326,572 - +0.6 1,326,572 - +0.1 1,326,572 - +0.9 1,326,572 - -0.2 1,326,572 - +0.6 1,326,572 - -1.8 1,326,572 - +0.4 1,326,572 - +0.8 1,326,572 - -1.8 1,326,572 - +0.1 1,326,572 - +1.4 1,326,572 - +0.3 1,326,572 - +0.3 1,326,572 - -0.4 1,326,572 - -0.7 1,326,572 - -1.2 1,326,572 - -2.7 1,326,572 - -0.4 1,326,572 - -0.2 1,326,572 - +0.4 1,326,572 - -2.5 1,326,572 - -1.9 1,326,572 - -0.9 1,326,572 - -0.6 1,326,572 - -0.1 1,326,572 - -1.6 1,326,572 - -1.1 1,326,572 - +0.2 1,326,572 - -0.4 1,326,578 + -0.1 1,326,578 + -1.7 1,326,578 + -2.0 1,326,578 + +0.4 1,326,578 + -1.2 1,326,579 - +0.9 1,326,579 - -1.5 1,326,579 - -0.8 1,326,579 - -0.2 1,326,874 - LRK53_RS05720 0.29 -0.4 1,326,874 - LRK53_RS05720 0.29 -0.6 1,326,874 - LRK53_RS05720 0.29 +0.6 1,326,917 + LRK53_RS05720 0.34 -0.1 1,326,917 + LRK53_RS05720 0.34 +1.0 1,326,917 + LRK53_RS05720 0.34 -0.9 1,326,917 + LRK53_RS05720 0.34 +0.0 1,326,917 + LRK53_RS05720 0.34 -1.1 1,326,917 + LRK53_RS05720 0.34 -0.3 1,326,917 + LRK53_RS05720 0.34 +0.3 1,326,917 + LRK53_RS05720 0.34 +0.1 1,326,917 + LRK53_RS05720 0.34 +0.8 1,326,917 + LRK53_RS05720 0.34 +1.8 1,326,917 + LRK53_RS05720 0.34 -0.3 1,326,918 - LRK53_RS05720 0.34 -1.8 1,326,918 - LRK53_RS05720 0.34 +1.2 1,326,918 - LRK53_RS05720 0.34 +0.9 1,326,918 - LRK53_RS05720 0.34 -0.4 1,326,918 - LRK53_RS05720 0.34 +1.8 1,326,918 - LRK53_RS05720 0.34 +0.9 1,326,918 - LRK53_RS05720 0.34 -1.3 1,326,918 - LRK53_RS05720 0.34 -0.8 1,326,918 - LRK53_RS05720 0.34 +0.9 1,326,918 - LRK53_RS05720 0.34 -0.4 1,326,918 - LRK53_RS05720 0.34 -1.4 1,326,918 - LRK53_RS05720 0.34 -4.0 1,326,918 - LRK53_RS05720 0.34 +0.6 1,326,918 - LRK53_RS05720 0.34 -1.1 1,326,918 - LRK53_RS05720 0.34 -1.4 1,326,918 - LRK53_RS05720 0.34 +0.3 1,326,918 - LRK53_RS05720 0.34 +0.3 1,326,918 - LRK53_RS05720 0.34 -0.7 1,326,918 - LRK53_RS05720 0.34 +0.8 1,326,918 - LRK53_RS05720 0.34 +1.2 1,326,918 - LRK53_RS05720 0.34 -0.1 1,326,921 + LRK53_RS05720 0.35 -0.2 1,326,921 + LRK53_RS05720 0.35 -0.0 1,326,922 - LRK53_RS05720 0.35 +0.9 1,326,922 - LRK53_RS05720 0.35 -0.9 1,326,922 - LRK53_RS05720 0.35 +0.3 1,326,922 - LRK53_RS05720 0.35 -1.0 1,326,922 - LRK53_RS05720 0.35 -0.6 1,326,922 - LRK53_RS05720 0.35 -0.2 1,326,922 - LRK53_RS05720 0.35 +1.0 1,326,930 + LRK53_RS05720 0.36 -1.3 1,326,936 + LRK53_RS05720 0.36 -0.7 1,326,936 + LRK53_RS05720 0.36 -1.1 1,326,936 + LRK53_RS05720 0.36 -0.6 1,326,937 - LRK53_RS05720 0.36 +2.1 1,326,937 - LRK53_RS05720 0.36 +0.6 1,326,960 + LRK53_RS05720 0.39 -1.2 1,326,960 + LRK53_RS05720 0.39 -0.7 1,326,960 + LRK53_RS05720 0.39 -0.4 1,326,960 + LRK53_RS05720 0.39 -1.3 1,326,960 + LRK53_RS05720 0.39 -2.1 1,326,960 + LRK53_RS05720 0.39 -1.8 1,326,960 + LRK53_RS05720 0.39 -0.4 1,326,961 - LRK53_RS05720 0.39 +2.6 1,326,961 - LRK53_RS05720 0.39 -0.1 1,326,961 - LRK53_RS05720 0.39 +0.4 1,326,961 - LRK53_RS05720 0.39 -0.8 1,326,961 - LRK53_RS05720 0.39 -1.2 1,326,961 - LRK53_RS05720 0.39 -0.1 1,326,961 - LRK53_RS05720 0.39 +0.3 1,327,548 + -0.8 1,327,548 + -0.9 1,327,548 + -1.3 1,327,548 + -1.7 1,327,548 + +0.5 1,327,548 + -0.4 1,327,548 + +0.4 1,327,548 + -0.3 1,327,549 - -2.5 1,327,549 - -0.8 1,327,549 - -2.0 1,327,549 - -1.1 1,327,549 - -0.8 1,327,549 - +0.4 1,327,613 + LRK53_RS05725 0.13 -0.1 1,327,613 + LRK53_RS05725 0.13 -2.6 1,327,613 + LRK53_RS05725 0.13 -2.2 1,327,613 + LRK53_RS05725 0.13 -0.4 1,327,613 + LRK53_RS05725 0.13 -1.2 1,327,613 + LRK53_RS05725 0.13 +0.4 1,327,614 - LRK53_RS05725 0.13 +1.8 1,327,614 - LRK53_RS05725 0.13 +3.2 1,327,614 - LRK53_RS05725 0.13 -0.4 1,327,614 - LRK53_RS05725 0.13 -0.1 1,327,614 - LRK53_RS05725 0.13 +0.1 1,327,614 - LRK53_RS05725 0.13 -0.8 1,327,614 - LRK53_RS05725 0.13 -2.5 1,327,614 - LRK53_RS05725 0.13 -0.8 1,327,614 - LRK53_RS05725 0.13 -2.3 1,327,614 - LRK53_RS05725 0.13 +0.8 1,327,614 - LRK53_RS05725 0.13 -0.1 1,327,614 - LRK53_RS05725 0.13 +0.3 1,327,785 - LRK53_RS05725 0.31 -2.1 1,327,785 - LRK53_RS05725 0.31 +0.0 1,328,166 + LRK53_RS05725 0.70 -0.7 1,328,166 + LRK53_RS05725 0.70 -0.8 1,328,166 + LRK53_RS05725 0.70 -2.0 1,328,166 + LRK53_RS05725 0.70 +2.1 1,328,166 + LRK53_RS05725 0.70 -1.5 1,328,166 + LRK53_RS05725 0.70 -0.6 1,328,166 + LRK53_RS05725 0.70 +0.2 1,328,166 + LRK53_RS05725 0.70 -0.1 1,328,167 - LRK53_RS05725 0.70 +0.6 1,328,167 - LRK53_RS05725 0.70 -1.2 1,328,167 - LRK53_RS05725 0.70 -0.4 1,328,167 - LRK53_RS05725 0.70 +1.1 1,328,167 - LRK53_RS05725 0.70 -0.4 1,328,167 - LRK53_RS05725 0.70 -1.4 1,328,167 - LRK53_RS05725 0.70 -2.7 1,328,167 - LRK53_RS05725 0.70 -0.5 1,328,167 - LRK53_RS05725 0.70 +0.2 1,328,167 - LRK53_RS05725 0.70 -0.1 1,328,167 - LRK53_RS05725 0.70 +0.0 1,328,167 - LRK53_RS05725 0.70 -0.6 1,328,167 - LRK53_RS05725 0.70 -1.2 1,328,171 + LRK53_RS05725 0.70 -0.7 1,328,171 + LRK53_RS05725 0.70 -0.4 1,328,171 + LRK53_RS05725 0.70 -1.3 1,328,171 + LRK53_RS05725 0.70 +0.2 1,328,171 + LRK53_RS05725 0.70 +1.9 1,328,171 + LRK53_RS05725 0.70 -2.2 1,328,171 + LRK53_RS05725 0.70 -0.7 1,328,171 + LRK53_RS05725 0.70 -1.3 1,328,171 + LRK53_RS05725 0.70 -0.8 1,328,171 + LRK53_RS05725 0.70 -0.5 1,328,171 + LRK53_RS05725 0.70 -0.9 1,328,171 + LRK53_RS05725 0.70 -0.5 1,328,172 - LRK53_RS05725 0.70 -0.4 1,328,172 - LRK53_RS05725 0.70 -0.7 1,328,172 - LRK53_RS05725 0.70 -0.9 1,328,172 - LRK53_RS05725 0.70 -0.5 1,328,172 - LRK53_RS05725 0.70 +1.3 1,328,172 - LRK53_RS05725 0.70 -0.1 1,328,172 - LRK53_RS05725 0.70 -0.8 1,328,351 + LRK53_RS05725 0.88 -2.6 1,328,351 + LRK53_RS05725 0.88 +1.2 1,328,352 - LRK53_RS05725 0.89 -0.8 1,328,352 - LRK53_RS05725 0.89 -1.2 1,328,352 - LRK53_RS05725 0.89 -0.7 1,328,352 - LRK53_RS05725 0.89 -1.5 1,328,352 - LRK53_RS05725 0.89 -0.7 1,328,352 - LRK53_RS05725 0.89 -0.1
Or see this region's nucleotide sequence