Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04025

Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04020 and LRK53_RS04025 are separated by 3 nucleotidesLRK53_RS04025 and LRK53_RS04030 are separated by 20 nucleotides LRK53_RS04020: LRK53_RS04020 - tetratricopeptide repeat-containing sulfotransferase family protein, at 940,375 to 942,204 _RS04020 LRK53_RS04025: LRK53_RS04025 - sulfotransferase, at 942,208 to 943,764 _RS04025 LRK53_RS04030: LRK53_RS04030 - sulfotransferase, at 943,785 to 945,362 _RS04030 Position (kb) 942 943 944Strain fitness (log2 ratio) -3 -2 -1 0 1at 941.426 kb on + strand, within LRK53_RS04020at 941.426 kb on + strand, within LRK53_RS04020at 941.427 kb on - strand, within LRK53_RS04020at 941.427 kb on - strand, within LRK53_RS04020at 941.620 kb on + strand, within LRK53_RS04020at 941.620 kb on + strand, within LRK53_RS04020at 941.620 kb on + strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.621 kb on - strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.782 kb on + strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.783 kb on - strand, within LRK53_RS04020at 941.851 kb on + strand, within LRK53_RS04020at 941.851 kb on + strand, within LRK53_RS04020at 941.852 kb on - strand, within LRK53_RS04020at 941.852 kb on - strand, within LRK53_RS04020at 941.852 kb on - strand, within LRK53_RS04020at 941.920 kb on + strand, within LRK53_RS04020at 942.052 kb on + strandat 942.052 kb on + strandat 942.052 kb on + strandat 942.052 kb on + strandat 942.052 kb on + strandat 942.052 kb on + strandat 942.053 kb on - strandat 942.053 kb on - strandat 942.053 kb on - strandat 942.053 kb on - strandat 942.053 kb on - strandat 942.166 kb on + strandat 942.166 kb on + strandat 942.166 kb on + strandat 942.166 kb on + strandat 942.166 kb on + strandat 942.167 kb on - strandat 942.252 kb on - strandat 942.425 kb on + strand, within LRK53_RS04025at 942.426 kb on - strand, within LRK53_RS04025at 942.426 kb on - strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.640 kb on + strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.641 kb on - strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.674 kb on + strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.675 kb on - strand, within LRK53_RS04025at 942.716 kb on + strand, within LRK53_RS04025at 942.716 kb on + strand, within LRK53_RS04025at 942.717 kb on - strand, within LRK53_RS04025at 942.717 kb on - strand, within LRK53_RS04025at 942.787 kb on + strand, within LRK53_RS04025at 943.699 kb on + strandat 943.699 kb on + strandat 943.699 kb on + strandat 943.699 kb on + strandat 943.699 kb on + strandat 943.699 kb on + strandat 943.699 kb on + strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.700 kb on - strandat 943.843 kb on + strandat 943.844 kb on - strandat 943.844 kb on - strandat 943.844 kb on - strandat 943.844 kb on - strandat 943.844 kb on - strandat 943.919 kb on + strandat 943.920 kb on - strandat 943.920 kb on - strandat 943.920 kb on - strandat 944.017 kb on + strand, within LRK53_RS04030at 944.017 kb on + strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.018 kb on - strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.119 kb on + strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.120 kb on - strand, within LRK53_RS04030at 944.147 kb on - strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.230 kb on + strand, within LRK53_RS04030at 944.231 kb on - strand, within LRK53_RS04030at 944.231 kb on - strand, within LRK53_RS04030at 944.302 kb on + strand, within LRK53_RS04030at 944.302 kb on + strand, within LRK53_RS04030at 944.303 kb on - strand, within LRK53_RS04030at 944.303 kb on - strand, within LRK53_RS04030at 944.660 kb on - strand, within LRK53_RS04030

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
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941,426 + LRK53_RS04020 0.57 -2.1
941,426 + LRK53_RS04020 0.57 -1.4
941,427 - LRK53_RS04020 0.57 -0.2
941,427 - LRK53_RS04020 0.57 -1.6
941,620 + LRK53_RS04020 0.68 -0.9
941,620 + LRK53_RS04020 0.68 +1.1
941,620 + LRK53_RS04020 0.68 -0.5
941,621 - LRK53_RS04020 0.68 -0.4
941,621 - LRK53_RS04020 0.68 -2.6
941,621 - LRK53_RS04020 0.68 -3.2
941,621 - LRK53_RS04020 0.68 -0.6
941,621 - LRK53_RS04020 0.68 -0.4
941,621 - LRK53_RS04020 0.68 -0.8
941,782 + LRK53_RS04020 0.77 -2.0
941,782 + LRK53_RS04020 0.77 -0.7
941,782 + LRK53_RS04020 0.77 -1.0
941,782 + LRK53_RS04020 0.77 -0.6
941,782 + LRK53_RS04020 0.77 +0.3
941,782 + LRK53_RS04020 0.77 +1.5
941,782 + LRK53_RS04020 0.77 +1.7
941,782 + LRK53_RS04020 0.77 -0.0
941,782 + LRK53_RS04020 0.77 +0.1
941,782 + LRK53_RS04020 0.77 -0.9
941,782 + LRK53_RS04020 0.77 +0.2
941,782 + LRK53_RS04020 0.77 -0.6
941,782 + LRK53_RS04020 0.77 -0.9
941,782 + LRK53_RS04020 0.77 -0.8
941,782 + LRK53_RS04020 0.77 -1.0
941,782 + LRK53_RS04020 0.77 +0.2
941,782 + LRK53_RS04020 0.77 -1.3
941,782 + LRK53_RS04020 0.77 -0.7
941,782 + LRK53_RS04020 0.77 +0.2
941,782 + LRK53_RS04020 0.77 +0.1
941,782 + LRK53_RS04020 0.77 +0.1
941,782 + LRK53_RS04020 0.77 -1.2
941,782 + LRK53_RS04020 0.77 +1.4
941,782 + LRK53_RS04020 0.77 +0.3
941,783 - LRK53_RS04020 0.77 -0.2
941,783 - LRK53_RS04020 0.77 -0.4
941,783 - LRK53_RS04020 0.77 -0.7
941,783 - LRK53_RS04020 0.77 -0.0
941,783 - LRK53_RS04020 0.77 -1.0
941,783 - LRK53_RS04020 0.77 -1.7
941,783 - LRK53_RS04020 0.77 -0.0
941,783 - LRK53_RS04020 0.77 -0.0
941,783 - LRK53_RS04020 0.77 -0.8
941,783 - LRK53_RS04020 0.77 -0.0
941,783 - LRK53_RS04020 0.77 -1.1
941,783 - LRK53_RS04020 0.77 -1.0
941,783 - LRK53_RS04020 0.77 -0.8
941,783 - LRK53_RS04020 0.77 -0.4
941,783 - LRK53_RS04020 0.77 -0.4
941,783 - LRK53_RS04020 0.77 +0.8
941,783 - LRK53_RS04020 0.77 +0.8
941,783 - LRK53_RS04020 0.77 -1.1
941,783 - LRK53_RS04020 0.77 -1.6
941,783 - LRK53_RS04020 0.77 -0.8
941,783 - LRK53_RS04020 0.77 -1.5
941,783 - LRK53_RS04020 0.77 -1.2
941,783 - LRK53_RS04020 0.77 -0.1
941,783 - LRK53_RS04020 0.77 -0.2
941,783 - LRK53_RS04020 0.77 -1.5
941,851 + LRK53_RS04020 0.81 -0.3
941,851 + LRK53_RS04020 0.81 +0.2
941,852 - LRK53_RS04020 0.81 -0.8
941,852 - LRK53_RS04020 0.81 -2.8
941,852 - LRK53_RS04020 0.81 -0.0
941,920 + LRK53_RS04020 0.84 -1.3
942,052 + -2.9
942,052 + +0.0
942,052 + -0.4
942,052 + -2.0
942,052 + -1.7
942,052 + +0.8
942,053 - -1.4
942,053 - +0.1
942,053 - +0.9
942,053 - -1.3
942,053 - -1.8
942,166 + -1.4
942,166 + -0.1
942,166 + +0.8
942,166 + -1.9
942,166 + -0.0
942,167 - -0.5
942,252 - -1.3
942,425 + LRK53_RS04025 0.14 -1.4
942,426 - LRK53_RS04025 0.14 -0.5
942,426 - LRK53_RS04025 0.14 -0.9
942,640 + LRK53_RS04025 0.28 -1.8
942,640 + LRK53_RS04025 0.28 +0.3
942,640 + LRK53_RS04025 0.28 -0.5
942,640 + LRK53_RS04025 0.28 -1.0
942,640 + LRK53_RS04025 0.28 -0.7
942,640 + LRK53_RS04025 0.28 -0.6
942,640 + LRK53_RS04025 0.28 -0.6
942,640 + LRK53_RS04025 0.28 +0.2
942,640 + LRK53_RS04025 0.28 -0.4
942,640 + LRK53_RS04025 0.28 -0.2
942,640 + LRK53_RS04025 0.28 -1.7
942,640 + LRK53_RS04025 0.28 -2.1
942,641 - LRK53_RS04025 0.28 -0.3
942,641 - LRK53_RS04025 0.28 -1.0
942,641 - LRK53_RS04025 0.28 -0.5
942,641 - LRK53_RS04025 0.28 -2.4
942,641 - LRK53_RS04025 0.28 -0.5
942,641 - LRK53_RS04025 0.28 -2.0
942,641 - LRK53_RS04025 0.28 -1.2
942,641 - LRK53_RS04025 0.28 -0.8
942,641 - LRK53_RS04025 0.28 -2.6
942,641 - LRK53_RS04025 0.28 -0.4
942,641 - LRK53_RS04025 0.28 +0.2
942,641 - LRK53_RS04025 0.28 +0.3
942,641 - LRK53_RS04025 0.28 -0.7
942,674 + LRK53_RS04025 0.30 -2.2
942,674 + LRK53_RS04025 0.30 -1.1
942,674 + LRK53_RS04025 0.30 -0.8
942,674 + LRK53_RS04025 0.30 -0.6
942,674 + LRK53_RS04025 0.30 -0.3
942,674 + LRK53_RS04025 0.30 -0.5
942,674 + LRK53_RS04025 0.30 +0.4
942,674 + LRK53_RS04025 0.30 -2.1
942,674 + LRK53_RS04025 0.30 -1.9
942,675 - LRK53_RS04025 0.30 -0.2
942,675 - LRK53_RS04025 0.30 -1.8
942,675 - LRK53_RS04025 0.30 -1.5
942,675 - LRK53_RS04025 0.30 -0.0
942,675 - LRK53_RS04025 0.30 -1.2
942,675 - LRK53_RS04025 0.30 -0.4
942,675 - LRK53_RS04025 0.30 -1.4
942,675 - LRK53_RS04025 0.30 -0.9
942,675 - LRK53_RS04025 0.30 +0.9
942,716 + LRK53_RS04025 0.33 +0.1
942,716 + LRK53_RS04025 0.33 -1.0
942,717 - LRK53_RS04025 0.33 -0.1
942,717 - LRK53_RS04025 0.33 -0.9
942,787 + LRK53_RS04025 0.37 -0.9
943,699 + -2.2
943,699 + -0.1
943,699 + -0.4
943,699 + -0.2
943,699 + +0.1
943,699 + -1.7
943,699 + -1.0
943,700 - -1.7
943,700 - -0.6
943,700 - -0.2
943,700 - -0.6
943,700 - -0.9
943,700 - +0.8
943,700 - -1.1
943,700 - +0.4
943,700 - -0.8
943,700 - -0.2
943,843 + +0.2
943,844 - -0.5
943,844 - -0.5
943,844 - -0.9
943,844 - -0.2
943,844 - -0.5
943,919 + -2.0
943,920 - -0.4
943,920 - -0.0
943,920 - -1.4
944,017 + LRK53_RS04030 0.15 -1.3
944,017 + LRK53_RS04030 0.15 -1.1
944,018 - LRK53_RS04030 0.15 -0.6
944,018 - LRK53_RS04030 0.15 -0.6
944,018 - LRK53_RS04030 0.15 -3.2
944,018 - LRK53_RS04030 0.15 +0.4
944,018 - LRK53_RS04030 0.15 -0.3
944,018 - LRK53_RS04030 0.15 +0.2
944,119 + LRK53_RS04030 0.21 +0.2
944,119 + LRK53_RS04030 0.21 +0.2
944,119 + LRK53_RS04030 0.21 -1.9
944,119 + LRK53_RS04030 0.21 +0.0
944,119 + LRK53_RS04030 0.21 -1.9
944,119 + LRK53_RS04030 0.21 -1.8
944,119 + LRK53_RS04030 0.21 -1.8
944,119 + LRK53_RS04030 0.21 -2.1
944,120 - LRK53_RS04030 0.21 -2.0
944,120 - LRK53_RS04030 0.21 -1.5
944,120 - LRK53_RS04030 0.21 -0.1
944,120 - LRK53_RS04030 0.21 -0.6
944,120 - LRK53_RS04030 0.21 -0.7
944,120 - LRK53_RS04030 0.21 -0.3
944,120 - LRK53_RS04030 0.21 -1.1
944,120 - LRK53_RS04030 0.21 -0.3
944,147 - LRK53_RS04030 0.23 -0.2
944,230 + LRK53_RS04030 0.28 +0.5
944,230 + LRK53_RS04030 0.28 -0.9
944,230 + LRK53_RS04030 0.28 +0.0
944,230 + LRK53_RS04030 0.28 +0.0
944,230 + LRK53_RS04030 0.28 -0.4
944,230 + LRK53_RS04030 0.28 -0.2
944,230 + LRK53_RS04030 0.28 -0.4
944,230 + LRK53_RS04030 0.28 -2.4
944,230 + LRK53_RS04030 0.28 -1.3
944,231 - LRK53_RS04030 0.28 -0.2
944,231 - LRK53_RS04030 0.28 -2.0
944,302 + LRK53_RS04030 0.33 -1.0
944,302 + LRK53_RS04030 0.33 -1.2
944,303 - LRK53_RS04030 0.33 -0.3
944,303 - LRK53_RS04030 0.33 -0.6
944,660 - LRK53_RS04030 0.55 -0.0

Or see this region's nucleotide sequence