Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03150

Experiment: Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03145 and LRK53_RS03150 are separated by 21 nucleotidesLRK53_RS03150 and LRK53_RS03155 overlap by 4 nucleotides LRK53_RS03145: LRK53_RS03145 - IS1595 family transposase, at 735,056 to 735,997 _RS03145 LRK53_RS03150: LRK53_RS03150 - IS4 family transposase, at 736,019 to 736,930 _RS03150 LRK53_RS03155: LRK53_RS03155 - threonine synthase, at 736,927 to 738,234 _RS03155 Position (kb) 736 737Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 735.119 kb on + strandat 735.199 kb on + strand, within LRK53_RS03145at 735.234 kb on - strand, within LRK53_RS03145at 735.329 kb on + strand, within LRK53_RS03145at 735.329 kb on + strand, within LRK53_RS03145at 735.329 kb on + strand, within LRK53_RS03145at 735.329 kb on + strand, within LRK53_RS03145at 735.329 kb on + strand, within LRK53_RS03145at 735.395 kb on + strand, within LRK53_RS03145at 735.395 kb on + strand, within LRK53_RS03145at 735.395 kb on + strand, within LRK53_RS03145at 735.395 kb on + strand, within LRK53_RS03145at 735.861 kb on - strand, within LRK53_RS03145at 735.861 kb on - strand, within LRK53_RS03145at 735.861 kb on - strand, within LRK53_RS03145at 735.873 kb on - strand, within LRK53_RS03145at 735.873 kb on - strand, within LRK53_RS03145at 735.995 kb on + strandat 735.995 kb on + strandat 735.995 kb on + strandat 735.995 kb on + strandat 735.995 kb on + strandat 735.995 kb on + strandat 735.995 kb on + strandat 736.140 kb on + strand, within LRK53_RS03150at 736.140 kb on + strand, within LRK53_RS03150at 736.141 kb on - strand, within LRK53_RS03150at 736.426 kb on + strand, within LRK53_RS03150at 736.426 kb on + strand, within LRK53_RS03150at 736.494 kb on + strand, within LRK53_RS03150at 736.494 kb on + strand, within LRK53_RS03150at 736.494 kb on + strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.495 kb on - strand, within LRK53_RS03150at 736.522 kb on + strand, within LRK53_RS03150at 736.522 kb on + strand, within LRK53_RS03150at 736.522 kb on + strand, within LRK53_RS03150at 736.522 kb on + strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.523 kb on - strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.556 kb on + strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.557 kb on - strand, within LRK53_RS03150at 736.558 kb on + strand, within LRK53_RS03150at 736.558 kb on + strand, within LRK53_RS03150at 736.558 kb on + strand, within LRK53_RS03150at 736.558 kb on + strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.559 kb on - strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.577 kb on + strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.578 kb on - strand, within LRK53_RS03150at 736.637 kb on + strand, within LRK53_RS03150at 736.637 kb on + strand, within LRK53_RS03150at 736.637 kb on + strand, within LRK53_RS03150at 736.637 kb on + strand, within LRK53_RS03150at 736.637 kb on + strand, within LRK53_RS03150at 736.638 kb on - strand, within LRK53_RS03150at 736.638 kb on - strand, within LRK53_RS03150at 736.638 kb on - strand, within LRK53_RS03150at 736.638 kb on - strand, within LRK53_RS03150at 736.640 kb on + strand, within LRK53_RS03150at 736.640 kb on + strand, within LRK53_RS03150at 736.640 kb on + strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.641 kb on - strand, within LRK53_RS03150at 736.656 kb on + strand, within LRK53_RS03150at 736.657 kb on - strand, within LRK53_RS03150at 736.657 kb on - strand, within LRK53_RS03150at 736.722 kb on - strand, within LRK53_RS03150at 736.722 kb on - strand, within LRK53_RS03150at 736.857 kb on - strandat 736.857 kb on - strandat 736.857 kb on - strandat 736.914 kb on - strandat 737.410 kb on + strand, within LRK53_RS03155at 737.410 kb on + strand, within LRK53_RS03155at 737.411 kb on - strand, within LRK53_RS03155at 737.411 kb on - strand, within LRK53_RS03155at 737.541 kb on - strand, within LRK53_RS03155at 737.541 kb on - strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.543 kb on + strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155at 737.544 kb on - strand, within LRK53_RS03155

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; Manganese (II) chloride tetrahydrate 10mM
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735,119 + +0.2
735,199 + LRK53_RS03145 0.15 +0.1
735,234 - LRK53_RS03145 0.19 +0.6
735,329 + LRK53_RS03145 0.29 +0.6
735,329 + LRK53_RS03145 0.29 +0.6
735,329 + LRK53_RS03145 0.29 -0.3
735,329 + LRK53_RS03145 0.29 -0.1
735,329 + LRK53_RS03145 0.29 -0.7
735,395 + LRK53_RS03145 0.36 -2.0
735,395 + LRK53_RS03145 0.36 -1.1
735,395 + LRK53_RS03145 0.36 -1.5
735,395 + LRK53_RS03145 0.36 -0.1
735,861 - LRK53_RS03145 0.85 -0.7
735,861 - LRK53_RS03145 0.85 -2.2
735,861 - LRK53_RS03145 0.85 +0.1
735,873 - LRK53_RS03145 0.87 +0.4
735,873 - LRK53_RS03145 0.87 +0.4
735,995 + -0.9
735,995 + +0.3
735,995 + +0.0
735,995 + -1.1
735,995 + +0.0
735,995 + -0.4
735,995 + -1.4
736,140 + LRK53_RS03150 0.13 -0.8
736,140 + LRK53_RS03150 0.13 -1.5
736,141 - LRK53_RS03150 0.13 -1.3
736,426 + LRK53_RS03150 0.45 +0.9
736,426 + LRK53_RS03150 0.45 +0.0
736,494 + LRK53_RS03150 0.52 -0.4
736,494 + LRK53_RS03150 0.52 +0.2
736,494 + LRK53_RS03150 0.52 -0.3
736,495 - LRK53_RS03150 0.52 -2.3
736,495 - LRK53_RS03150 0.52 +0.1
736,495 - LRK53_RS03150 0.52 +0.5
736,495 - LRK53_RS03150 0.52 -2.1
736,495 - LRK53_RS03150 0.52 -1.1
736,495 - LRK53_RS03150 0.52 +0.3
736,495 - LRK53_RS03150 0.52 -0.0
736,495 - LRK53_RS03150 0.52 -0.5
736,495 - LRK53_RS03150 0.52 -0.8
736,522 + LRK53_RS03150 0.55 -0.9
736,522 + LRK53_RS03150 0.55 +0.1
736,522 + LRK53_RS03150 0.55 -0.7
736,522 + LRK53_RS03150 0.55 +0.0
736,523 - LRK53_RS03150 0.55 +0.0
736,523 - LRK53_RS03150 0.55 -1.4
736,523 - LRK53_RS03150 0.55 +0.6
736,523 - LRK53_RS03150 0.55 +3.3
736,523 - LRK53_RS03150 0.55 -2.1
736,523 - LRK53_RS03150 0.55 -0.6
736,556 + LRK53_RS03150 0.59 +1.9
736,556 + LRK53_RS03150 0.59 +0.3
736,556 + LRK53_RS03150 0.59 -0.6
736,556 + LRK53_RS03150 0.59 -0.5
736,556 + LRK53_RS03150 0.59 -1.1
736,556 + LRK53_RS03150 0.59 +1.7
736,557 - LRK53_RS03150 0.59 -0.1
736,557 - LRK53_RS03150 0.59 -0.5
736,557 - LRK53_RS03150 0.59 -0.8
736,557 - LRK53_RS03150 0.59 -0.6
736,557 - LRK53_RS03150 0.59 +1.9
736,557 - LRK53_RS03150 0.59 -2.4
736,557 - LRK53_RS03150 0.59 -1.7
736,557 - LRK53_RS03150 0.59 +0.7
736,558 + LRK53_RS03150 0.59 -1.5
736,558 + LRK53_RS03150 0.59 -0.6
736,558 + LRK53_RS03150 0.59 -0.3
736,558 + LRK53_RS03150 0.59 -1.5
736,559 - LRK53_RS03150 0.59 +0.5
736,559 - LRK53_RS03150 0.59 -1.3
736,559 - LRK53_RS03150 0.59 -1.7
736,559 - LRK53_RS03150 0.59 +0.6
736,559 - LRK53_RS03150 0.59 -0.5
736,559 - LRK53_RS03150 0.59 -2.1
736,559 - LRK53_RS03150 0.59 -2.2
736,559 - LRK53_RS03150 0.59 -0.1
736,559 - LRK53_RS03150 0.59 -1.3
736,559 - LRK53_RS03150 0.59 -0.6
736,577 + LRK53_RS03150 0.61 -1.4
736,577 + LRK53_RS03150 0.61 -1.5
736,577 + LRK53_RS03150 0.61 -0.7
736,577 + LRK53_RS03150 0.61 -0.0
736,577 + LRK53_RS03150 0.61 +0.2
736,577 + LRK53_RS03150 0.61 -0.3
736,577 + LRK53_RS03150 0.61 +1.5
736,577 + LRK53_RS03150 0.61 -1.6
736,577 + LRK53_RS03150 0.61 +1.2
736,577 + LRK53_RS03150 0.61 +1.2
736,577 + LRK53_RS03150 0.61 -2.0
736,577 + LRK53_RS03150 0.61 -0.4
736,577 + LRK53_RS03150 0.61 +0.7
736,577 + LRK53_RS03150 0.61 -3.0
736,578 - LRK53_RS03150 0.61 -0.6
736,578 - LRK53_RS03150 0.61 +1.0
736,578 - LRK53_RS03150 0.61 -1.3
736,578 - LRK53_RS03150 0.61 -0.9
736,578 - LRK53_RS03150 0.61 -0.3
736,578 - LRK53_RS03150 0.61 -0.1
736,578 - LRK53_RS03150 0.61 -0.7
736,578 - LRK53_RS03150 0.61 -1.0
736,578 - LRK53_RS03150 0.61 +0.2
736,578 - LRK53_RS03150 0.61 +0.2
736,578 - LRK53_RS03150 0.61 -0.2
736,578 - LRK53_RS03150 0.61 +2.0
736,578 - LRK53_RS03150 0.61 -0.6
736,578 - LRK53_RS03150 0.61 -0.8
736,637 + LRK53_RS03150 0.68 -0.2
736,637 + LRK53_RS03150 0.68 -2.4
736,637 + LRK53_RS03150 0.68 -1.8
736,637 + LRK53_RS03150 0.68 -1.0
736,637 + LRK53_RS03150 0.68 -1.0
736,638 - LRK53_RS03150 0.68 -1.5
736,638 - LRK53_RS03150 0.68 -0.5
736,638 - LRK53_RS03150 0.68 -1.0
736,638 - LRK53_RS03150 0.68 -2.3
736,640 + LRK53_RS03150 0.68 +2.1
736,640 + LRK53_RS03150 0.68 -0.3
736,640 + LRK53_RS03150 0.68 -1.5
736,641 - LRK53_RS03150 0.68 +1.4
736,641 - LRK53_RS03150 0.68 -0.2
736,641 - LRK53_RS03150 0.68 +0.7
736,641 - LRK53_RS03150 0.68 -0.1
736,641 - LRK53_RS03150 0.68 +0.4
736,641 - LRK53_RS03150 0.68 +0.4
736,656 + LRK53_RS03150 0.70 +0.0
736,657 - LRK53_RS03150 0.70 -0.0
736,657 - LRK53_RS03150 0.70 -0.7
736,722 - LRK53_RS03150 0.77 -0.7
736,722 - LRK53_RS03150 0.77 -0.4
736,857 - +1.6
736,857 - -0.4
736,857 - -1.1
736,914 - -1.1
737,410 + LRK53_RS03155 0.37 -0.6
737,410 + LRK53_RS03155 0.37 +1.0
737,411 - LRK53_RS03155 0.37 -0.1
737,411 - LRK53_RS03155 0.37 +1.2
737,541 - LRK53_RS03155 0.47 -1.0
737,541 - LRK53_RS03155 0.47 -1.1
737,543 + LRK53_RS03155 0.47 +0.0
737,543 + LRK53_RS03155 0.47 -0.3
737,543 + LRK53_RS03155 0.47 -0.5
737,543 + LRK53_RS03155 0.47 +2.3
737,544 - LRK53_RS03155 0.47 -1.0
737,544 - LRK53_RS03155 0.47 -0.3
737,544 - LRK53_RS03155 0.47 -1.1
737,544 - LRK53_RS03155 0.47 -2.6
737,544 - LRK53_RS03155 0.47 -2.4
737,544 - LRK53_RS03155 0.47 -1.0
737,544 - LRK53_RS03155 0.47 -0.8

Or see this region's nucleotide sequence